diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 0000000..827d37b --- /dev/null +++ b/.dockerignore @@ -0,0 +1,2 @@ +**/.venv/ +**/__pycache__/ diff --git a/.gitignore b/.gitignore index 870f370..7c81190 100644 --- a/.gitignore +++ b/.gitignore @@ -1,17 +1,19 @@ +# Secrets +/.env + # Locally installed environments -/.venv/ +/app/.venv/ /node_modules/ -# Local development database +# Local development data /.postgres/ +/.gotify/ # Cache files and directories **/*.pyc **/__pycache__/ /.parcel-cache/ - -# Bundled files -/dist/ +/app/static/dist/ # Latex compiled files **/*.aux diff --git a/.postcssrc b/.postcssrc index f56b326..fd23504 100644 --- a/.postcssrc +++ b/.postcssrc @@ -1,7 +1,5 @@ { -  "plugins": { -    "postcss-import": {}, -    "tailwindcss/nesting": {}, -    "tailwindcss": {}, -  } + "plugins": { + "tailwindcss": {}, + } } diff --git a/Caddyfile b/Caddyfile new file mode 100644 index 0000000..f25042e --- /dev/null +++ b/Caddyfile @@ -0,0 +1,10 @@ +:8000 { + handle * { + reverse_proxy * medwings-django:8000 + } + + log { + output stderr + format console + } +} diff --git a/README.md b/README.md index dee2640..ff3ba5b 100644 --- a/README.md +++ b/README.md @@ -1,57 +1,89 @@ # MEDWings -Mobile Early Deterioration Warning System. +Medwings is the *Mobile Early Deterioration Warning System*. +It is a proof of concept for a remote patient monitoring system, designed for use by elevated-risk patients +outside of direct medical supervision, such as at home or on the go. -# MEWS +The application utilizes smart medical devices to access vitals data gathered by users remotely. +Data is aggregated, and a clinical early warning score is calculated based on the readings. -The following vital signs need to be recorded for a MEWS calculation: +The Medwings application is split into different modules, each handling a specific responsibility: -* Heart Rate -* SPO2 -* Blood Pressure -* Body Temperature -* Respiration Rate +- [core](./app/core/README.md): global files and configuration +- [authentication](./app/authentication/README.md): user creation and login/logout management +- [medwings](./app/medwings/README.md): everything related to vitals data and MEWS calculation +- [gotify](./app/gotify/README.md): interfaces to the notification server +- [withings](./app/withings/README.md): interfaces to the Withings API -A detailed explanation and formula [can be found here](https://www.mdcalc.com/calc/1875/modified-early-warning-score-mews-clinical-deterioration#evidence). +You can read more about each module and its functionality in each section mentioned above. -# Handheld Devices +## Development -We have procured the following devices for vitals data measurement: +### Sensitive Configuration Data -* [Withings Scanwatch](https://www.withings.com/de/en/scanwatch) - * Heart Rate, SPO2 -* [Withings Thermo](https://www.withings.com/de/en/thermo) - * Body Surface Temperature -* [WIthings BPM Core](https://www.withings.com/de/en/bpm-core) - * Blood Pressure +To avoid leaking sensitive configuration data, such as database passwords or API keys, all such values are stored in the +`.env`-file. -## API Access +Prior to running the application, you must create a file called `.env` in the project root. +The file contains the following environment variables: -Data is gathered by taking measurements using the devices, either actively (BP sleeve, thermometer) or passively (smartwatch). -The devices are connected to the Withings mobile app. -The mobile app then regularly pushes gathered data to the Withings cloud. +```conf +TIMEZONE=Europe/Berlin +PG_NAME=medwings +PG_USER=medwings +PG_PASSWORD=secret +PG_HOST=medwings-postgres +PG_PORT=5432 +GOTIFY_USER=gotify +GOTIFY_PASSWORD=secret +GOTIFY_HOST=medwings-gotify +GOTIFY_PUBLIC_URL=https://notifications.medwings.example.com/ +WITHINGS_CLIENT_ID=abc123myClientId +WITHINGS_CLIENT_SECRET=abc123myClientSecret +``` -The Withings Dev Free plan allows for 120 API requests per minute. -Access to vitals data is available through the [Withings API](https://developer.withings.com/). +You should set the values of the following variables: -A detailed [API integration guide](https://developer.withings.com/developer-guide/v3/integration-guide/public-health-data-api/public-health-data-api-overview/), -as well as an [API reference guide](https://developer.withings.com/api-reference) are available online. +| variable | description | value | +|----------|-------------|-------| +| PG_PASSWORD | password for the PostgreSQL admin user | a random string of 32 characters | +| GOTIFY_USER | name of the Gotify admin user | a random string of 32 characters | +| GOTIFY_PASSWORD | password for the Gotify admin user | a random string of 32 characters | +| GOTIFY_PUBLIC_URL | URL where your public Gotify server can be reached | this depends on your deployment environment | +| WITHINGS_CLIENT_ID | Your Withings API client id | see [Withings API](./app/withings/README.md#api-access) | +| WITHINGS_CLIENT_SECRET | Your Withings API client secret | see [Withings API](./app/withings/README.md#api-access) | -# Development -To start the development compose-stack, run the following command: +### Starting the dev environment + +Once your environment vars are set up, you can run the backend and webserver, by running the following command: ```bash sudo docker-compose -f development.docker-compose.yml up --force-recreate --build --remove-orphans ``` -Run [alembic](https://alembic.sqlalchemy.org/en/latest/) database migrations inside the running container like so: +In a separate terminal, you should also start the frontend asset bundler: ```bash -sudo docker exec -w /app/backend/database -it backend alembic upgrade head +npm run start ``` -To run commands inside the backend container, run the following: +It supports file watching and automatic recompilation of the project's CSS and JS bundle. + +#### Running commands inside the container + +To run commands inside the django container, run the following: ```bash -sudo docker exec -it backend +sudo docker exec -itu django medwings-django +``` + +Run database migrations inside the running container like so: + +```bash +sudo docker exec -itu medwings-django python manage.py migrate +``` + +To enter django's interactive shell, run: +```bash +sudo docker exec -itu medwings-django python manage.py shell ``` diff --git a/app/authentication/README.md b/app/authentication/README.md new file mode 100644 index 0000000..f2554a1 --- /dev/null +++ b/app/authentication/README.md @@ -0,0 +1,6 @@ +# Authentication + +This module handles user management, such as user login and user registration. + +This also includes handling the oauth2 token retrieval in the background, which is necessary to retrieve +data from the Withings Public Health Cloud on behalf of users. diff --git a/backend/__init__.py b/app/authentication/__init__.py similarity index 100% rename from backend/__init__.py rename to app/authentication/__init__.py diff --git a/app/authentication/apps.py b/app/authentication/apps.py new file mode 100644 index 0000000..8bab8df --- /dev/null +++ b/app/authentication/apps.py @@ -0,0 +1,6 @@ +from django.apps import AppConfig + + +class AuthenticationConfig(AppConfig): + default_auto_field = 'django.db.models.BigAutoField' + name = 'authentication' diff --git a/app/authentication/forms.py b/app/authentication/forms.py new file mode 100644 index 0000000..09ef910 --- /dev/null +++ b/app/authentication/forms.py @@ -0,0 +1,12 @@ +from django import forms +from django.contrib.auth.forms import UserCreationForm +from django.contrib.auth.models import User + +class CustomUserCreationForm(UserCreationForm): + first_name = forms.CharField(required=True) + last_name = forms.CharField(required=True) + email = forms.EmailField(required=True) + + class Meta: + model = User + fields = ("username", "first_name", "last_name", "email", "password1", "password2") diff --git a/backend/crud/__init__.py b/app/authentication/migrations/__init__.py similarity index 100% rename from backend/crud/__init__.py rename to app/authentication/migrations/__init__.py diff --git a/app/authentication/templates/authentication/login.html b/app/authentication/templates/authentication/login.html new file mode 100644 index 0000000..ef982d0 --- /dev/null +++ b/app/authentication/templates/authentication/login.html @@ -0,0 +1,64 @@ +{% extends 'core/base.html' %} +{% load static %} +{% load widget_tweaks %} +{% block title %} + Medwings | Log In +{% endblock title %} + +{% block content %} +
+

Log In

+
+ {% csrf_token %} +
+ Please enter your login details + + {% if form.non_field_errors %} +
+ {% for error in form.non_field_errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} + +
+ +
+ {% render_field form.username|add_error_class:"error" %} + + {% if form.username.errors %} +
+ {% for error in form.username.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field form.password|add_error_class:"error" %} + + {% if form.password.errors %} +
+ {% for error in form.password.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ + + +
+
+ + {# Assumes you set up the password_reset view in your URLconf #} + {% comment %}

Lost password?

{% endcomment %} +
+{% endblock content %} diff --git a/app/authentication/templates/authentication/logout.html b/app/authentication/templates/authentication/logout.html new file mode 100644 index 0000000..8f2e9bf --- /dev/null +++ b/app/authentication/templates/authentication/logout.html @@ -0,0 +1,4 @@ +{% extends 'core/base.html' %} +{% block content %} +

You have been logged out.

+{% endblock content %} diff --git a/app/authentication/templates/authentication/register-continue.html b/app/authentication/templates/authentication/register-continue.html new file mode 100644 index 0000000..b8e8f19 --- /dev/null +++ b/app/authentication/templates/authentication/register-continue.html @@ -0,0 +1,145 @@ +{% extends 'core/base.html' %} +{% load static %} +{% load widget_tweaks %} +{% block title %} + Medwings | Sign Up +{% endblock title %} + +{% block content %} +
+

Register

+
+ {% csrf_token %} +
+ Please enter your profile information + + {% if form.non_field_errors %} +
+ {% for error in form.non_field_errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} + +
+ +
+ {% render_field user_form.first_name|add_error_class:"error" %} + + {% if user_form.first_name.errors %} +
+ {% for error in user_form.first_name.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field user_form.last_name|add_error_class:"error" %} + + {% if user_form.last_name.errors %} +
+ {% for error in user_form.last_name.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field profile_form.date_of_birth|add_error_class:"error" %} + + {% if profile_form.date_of_birth.errors %} +
+ {% for error in profile_form.date_of_birth.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field profile_form.sex|add_error_class:"error" %} + + {% if profile_form.sex.errors %} +
+ {% for error in profile_form.sex.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field user_form.email|add_error_class:"error" %} + + {% if user_form.email.errors %} +
+ {% for error in user_form.email.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field user_form.username|add_error_class:"error" %} + + {% if user_form.username.errors %} +
+ {% for error in user_form.username.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field user_form.password1|add_error_class:"error" %} + + {% if user_form.password1.errors %} +
+ {% for error in user_form.password1.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ {% render_field user_form.password2|add_error_class:"error" %} + + {% if user_form.password2.errors %} +
+ {% for error in user_form.password2.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} +
+ +
+ + + +
+
+
+{% endblock content %} diff --git a/app/authentication/templates/authentication/register-finalize.html b/app/authentication/templates/authentication/register-finalize.html new file mode 100644 index 0000000..638de0c --- /dev/null +++ b/app/authentication/templates/authentication/register-finalize.html @@ -0,0 +1,19 @@ +{% extends 'core/base.html' %} +{% load static %} +{% block title %} + Medwings | Sign Up +{% endblock title %} + +{% block content %} +
+

Register

+

To finalize your registration and receive regular notifications, please take the following steps:

+
+
    +
  1. Install the Gotify App on your smartphone, available on F-Droid or on the Google Play Store.
    2. +
  2. Open the app, and connect to our notification server {{ gotify_public_url }} and log in using your Medwings username and password.
    3. +
+
+

All set! You can now log in to view your data or take your first MEWS measurement. +

+{% endblock content %} diff --git a/app/authentication/templates/authentication/register-init.html b/app/authentication/templates/authentication/register-init.html new file mode 100644 index 0000000..b245439 --- /dev/null +++ b/app/authentication/templates/authentication/register-init.html @@ -0,0 +1,21 @@ +{% extends 'core/base.html' %} +{% load static %} +{% block title %} + Medwings | Sign Up +{% endblock title %} + +{% block content %} +
+

Register

+

+ Something something glad you're signing up. +

+
+

To get started, please allow us to access your health data

+ Link Withings Account +
+

+ Something something why this is necessary. +

+
+{% endblock content %} diff --git a/app/authentication/urls.py b/app/authentication/urls.py new file mode 100644 index 0000000..96477d2 --- /dev/null +++ b/app/authentication/urls.py @@ -0,0 +1,12 @@ +from django.urls import path +from django.contrib.auth import views as auth_views + +from . import views + +urlpatterns = [ + path("login/", auth_views.LoginView.as_view(template_name="authentication/login.html"), name="login"), + path("logout/", auth_views.LogoutView.as_view(template_name="authentication/logout.html"), name="logout"), + path("register/init/", views.register_init, name="register-init"), + path("register/continue/", views.register_continue, name="register-continue"), + path("register/finalize/", views.register_finalize, name="register-finalize"), +] diff --git a/app/authentication/views.py b/app/authentication/views.py new file mode 100644 index 0000000..05128e5 --- /dev/null +++ b/app/authentication/views.py @@ -0,0 +1,136 @@ +from urllib.parse import urlencode +from uuid import uuid4 +import logging + +from django.shortcuts import redirect, render +from django.conf import settings +from django.urls import reverse +from django.core.exceptions import PermissionDenied +from django.http import HttpResponseBadRequest +from django.utils.dateparse import parse_datetime + +import withings.api +import withings.models +import gotify.api +import gotify.models +from medwings.forms import ProfileForm +from .forms import CustomUserCreationForm + + +def register_init(request): + if request.user.is_authenticated: + raise PermissionDenied('You are already registered and logged in.') + + # Generate a unique token and save it for later + request.session.flush() + registration_sequence_token = str(uuid4()) + request.session['registration_sequence_token'] = registration_sequence_token + + auth_url_base = 'https://account.withings.com/oauth2_user/authorize2' + auth_url_params = { + 'response_type': 'code', + 'client_id': settings.WITHINGS_CONFIG['CLIENT_ID'], + 'scope': 'user.metrics,user.activity', + 'redirect_uri': request.build_absolute_uri(reverse('register-continue')), + 'state': registration_sequence_token + } + auth_url = f"{auth_url_base}?{urlencode(auth_url_params)}" + + context = { + "auth_url": auth_url + } + + return render(request, 'authentication/register-init.html', context) + + +def register_continue(request): + if request.user.is_authenticated: + raise PermissionDenied('You are already registered and logged in.') + + authorization_code = request.GET.get('code') + authorization_state = request.GET.get('state') + if not authorization_code: + return HttpResponseBadRequest() + if not authorization_state: + return HttpResponseBadRequest() + if not request.session.get('registration_sequence_token', None) == authorization_state: + return HttpResponseBadRequest() + + if request.method == 'GET': + # Fetch access and refresh tokens and save them to session storage + redirect_uri = request.build_absolute_uri(reverse('register-continue')) + response_data = withings.api.fetch_initial_tokens(authorization_code, redirect_uri) + if response_data['status'] != 0: + return HttpResponseBadRequest() + withings.api.save_tokens_to_session(request, response_data) + + user_form = CustomUserCreationForm() + profile_form = ProfileForm() + + else: + user_form = CustomUserCreationForm(request.POST) + profile_form = ProfileForm(request.POST) + + if user_form.is_valid() and profile_form.is_valid(): + user = user_form.save(commit=False) + profile = profile_form.save(commit=False) + profile.user = user + + user_password = request.POST.get('password1') + gotify_user_info = gotify.api.create_user(user.username, user_password) + gotify_app_info = gotify.api.create_application(user.username, user_password) + gotify.api.upload_application_picture(user.username, user_password, gotify_app_info['id']) + gotify_user = gotify.models.GotifyUser( + user=user, + id=gotify_user_info['id'] + ) + gotify_app = gotify.models.GotifyApplication( + user=gotify_user, + id=gotify_app_info['id'], + token=gotify_app_info['token'] + ) + + withings_api_account = withings.models.ApiAccount( + user=user, + userid=request.session.get('withings_userid') + ) + withings_access_token = withings.models.AccessToken( + account=withings_api_account, + value=request.session.get('withings_access_token'), + expires=parse_datetime(request.session.get('withings_access_token_expiry')) + ) + withings_refresh_token = withings.models.RefreshToken( + account=withings_api_account, + value=request.session.get('withings_refresh_token'), + expires=parse_datetime(request.session.get('withings_refresh_token_expiry')) + ) + + for instance in [ + user, profile, + gotify_user, gotify_app, + withings_api_account, withings_access_token, withings_refresh_token + ]: + instance.save() + + request.session.flush() + withings_api_account.update_records() + + return redirect('register-finalize') + + context = { + 'user_form': user_form, + 'profile_form': profile_form, + } + + return render(request, 'authentication/register-continue.html', context) + + +def register_finalize(request): + if request.user.is_authenticated: + raise PermissionDenied('You are already registered and logged in.') + + context = { + "gotify_public_url": settings.GOTIFY_CONFIG['PUBLIC_URL'] + } + + return render(request, 'authentication/register-finalize.html', context) diff --git a/app/core/README.md b/app/core/README.md new file mode 100644 index 0000000..3e89fba --- /dev/null +++ b/app/core/README.md @@ -0,0 +1,26 @@ +# Core + +This module is the main entrypoint for the application. +It provides global configuration variables and shared files. + +## Templates + +Shared template files are defined in [./templates/core/](./templates/core/). + +These include the base template, which all others inherit from, as well as the navigation bar and footer of the site. + +## Static files + +Static files are stored in [/app/static/](../app/static/) and served here by the webserver. + +**Warning:** files stored in this directory are publicly available. + +You can access static files in your Django template as follows: + +```html +{% load static %} + +... + +A Withings Scanwatch. +``` diff --git a/backend/database/__init__.py b/app/core/__init__.py similarity index 100% rename from backend/database/__init__.py rename to app/core/__init__.py diff --git a/app/core/asgi.py b/app/core/asgi.py new file mode 100644 index 0000000..3b35c6b --- /dev/null +++ b/app/core/asgi.py @@ -0,0 +1,16 @@ +""" +ASGI config for core project. + +It exposes the ASGI callable as a module-level variable named ``application``. + +For more information on this file, see +https://docs.djangoproject.com/en/4.2/howto/deployment/asgi/ +""" + +import os + +from django.core.asgi import get_asgi_application + +os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'core.settings') + +application = get_asgi_application() diff --git a/app/core/settings.py b/app/core/settings.py new file mode 100644 index 0000000..77661a4 --- /dev/null +++ b/app/core/settings.py @@ -0,0 +1,142 @@ +""" +Django settings for core project. + +Generated by 'django-admin startproject' using Django 4.2.3. + +For more information on this file, see +https://docs.djangoproject.com/en/4.2/topics/settings/ + +For the full list of settings and their values, see +https://docs.djangoproject.com/en/4.2/ref/settings/ +""" + +from pathlib import Path +from os import getenv + + +# Build paths inside the project like this: BASE_DIR / 'subdir'. +BASE_DIR = Path(__file__).resolve().parent.parent + + +# Quick-start development settings - unsuitable for production +# See https://docs.djangoproject.com/en/4.2/howto/deployment/checklist/ +# SECURITY WARNING: keep the secret key used in production secret! +SECRET_KEY = 'django-insecure-s^q)z%f-7=1h5b00ctki2*-w=#3!k@p-#sq%=eajw)x2axx-e5' +# SECURITY WARNING: don't run with debug turned on in production! +DEBUG = True +ALLOWED_HOSTS = [ + 'localhost', + '127.0.0.1', + '192.168.2.141' +] + + +# Application definition +INSTALLED_APPS = [ + 'widget_tweaks', + 'core', + 'authentication', + 'medwings', + 'withings', + 'gotify', + 'django.contrib.auth', + 'django.contrib.contenttypes', + 'django.contrib.sessions', + 'django.contrib.messages', + 'django.contrib.staticfiles', +] +MIDDLEWARE = [ + 'django.middleware.security.SecurityMiddleware', + 'django.contrib.sessions.middleware.SessionMiddleware', + 'django.middleware.common.CommonMiddleware', + 'django.middleware.csrf.CsrfViewMiddleware', + 'django.contrib.auth.middleware.AuthenticationMiddleware', + 'django.contrib.messages.middleware.MessageMiddleware', + 'django.middleware.clickjacking.XFrameOptionsMiddleware', +] +ROOT_URLCONF = 'core.urls' +TEMPLATES = [ + { + 'BACKEND': 'django.template.backends.django.DjangoTemplates', + 'DIRS': [], + 'APP_DIRS': True, + 'OPTIONS': { + 'context_processors': [ + 'django.template.context_processors.debug', + 'django.template.context_processors.request', + 'django.contrib.auth.context_processors.auth', + 'django.contrib.messages.context_processors.messages', + ], + }, + }, +] +WSGI_APPLICATION = 'core.wsgi.application' + + +# Database +# https://docs.djangoproject.com/en/4.2/ref/settings/#databases +DATABASES = { + 'default': { + 'ENGINE': 'django.db.backends.postgresql', + 'NAME': getenv('PG_NAME', 'medwings'), + 'USER': getenv('PG_USER', 'medwings'), + 'PASSWORD': getenv('PG_PASSWORD', 'medwings'), + 'HOST': getenv('PG_HOST', 'medwings-postgres'), + 'PORT': getenv('PG_PORT', '5432'), + } +} + + +# Password validation +# https://docs.djangoproject.com/en/4.2/ref/settings/#auth-password-validators +AUTH_PASSWORD_VALIDATORS = [ + { + 'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator', + }, +] +LOGIN_REDIRECT_URL = 'home' +LOGIN_URL = 'login' +LOGOUT_REDIRECT_URL = 'home' + + +# Internationalization +# https://docs.djangoproject.com/en/4.2/topics/i18n/ +LANGUAGE_CODE = 'en-us' +TIME_ZONE = getenv('TZ', 'Europe/Berlin') +USE_I18N = True +USE_TZ = True + + +# Static files (CSS, JavaScript, Images) +# https://docs.djangoproject.com/en/4.2/howto/static-files/ +STATIC_URL = 'static/' +STATICFILES_DIRS = [ + BASE_DIR / 'static', +] + + +# Default primary key field type +# https://docs.djangoproject.com/en/4.2/ref/settings/#default-auto-field +DEFAULT_AUTO_FIELD = 'django.db.models.BigAutoField' + + +WITHINGS_CONFIG = { + 'CLIENT_ID': getenv('WITHINGS_CLIENT_ID'), + 'CLIENT_SECRET': getenv('WITHINGS_CLIENT_SECRET'), + 'ENDPOINT_URL_OAUTH2': 'https://wbsapi.withings.net/v2/oauth2' +} +GOTIFY_CONFIG = { + 'USERNAME': getenv('GOTIFY_USER'), + 'PASSWORD': getenv('GOTIFY_PASSWORD'), + 'HOST': getenv('GOTIFY_HOST'), + 'PUBLIC_URL': getenv('GOTIFY_PUBLIC_URL') +} diff --git a/app/core/templates/core/base.html b/app/core/templates/core/base.html new file mode 100644 index 0000000..7020cce --- /dev/null +++ b/app/core/templates/core/base.html @@ -0,0 +1,28 @@ +{% load static %} + + + + + + + {% block title %}Medwings{% endblock title %} + + + + + + + +
+ {% include 'core/navbar.html' %} +
+
+ {% block content %} + {% endblock content %} +
+
+ {% include 'core/footer.html' %} +
+ + + diff --git a/app/core/templates/core/footer.html b/app/core/templates/core/footer.html new file mode 100644 index 0000000..ea7ad65 --- /dev/null +++ b/app/core/templates/core/footer.html @@ -0,0 +1,3 @@ +
+

© 2023 Julian Lobbes

+
diff --git a/app/core/templates/core/navbar.html b/app/core/templates/core/navbar.html new file mode 100644 index 0000000..bcb1cd3 --- /dev/null +++ b/app/core/templates/core/navbar.html @@ -0,0 +1,55 @@ + + diff --git a/app/core/urls.py b/app/core/urls.py new file mode 100644 index 0000000..d79502e --- /dev/null +++ b/app/core/urls.py @@ -0,0 +1,7 @@ +from django.contrib import admin +from django.urls import include, path + +urlpatterns = [ + path('', include('medwings.urls')), + path('auth/', include('authentication.urls')), +] diff --git a/app/core/wsgi.py b/app/core/wsgi.py new file mode 100644 index 0000000..f44964d --- /dev/null +++ b/app/core/wsgi.py @@ -0,0 +1,16 @@ +""" +WSGI config for core project. + +It exposes the WSGI callable as a module-level variable named ``application``. + +For more information on this file, see +https://docs.djangoproject.com/en/4.2/howto/deployment/wsgi/ +""" + +import os + +from django.core.wsgi import get_wsgi_application + +os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'core.settings') + +application = get_wsgi_application() diff --git a/app/gotify/README.md b/app/gotify/README.md new file mode 100644 index 0000000..184afc4 --- /dev/null +++ b/app/gotify/README.md @@ -0,0 +1,8 @@ +# Gotify + +This module provides interfaces for a [Gotify Notfication Server](https://gotify.net/), +which allows the application to send push notifications to user's phones. + +Gotify is a separate microservice which allows users to subscribe to a notification channel. +The Gotify instance is created as a separate Docker container, and Medwings handles the creation +of users, applications and messages behind the scenes. diff --git a/backend/models/__init__.py b/app/gotify/__init__.py similarity index 100% rename from backend/models/__init__.py rename to app/gotify/__init__.py diff --git a/app/gotify/api.py b/app/gotify/api.py new file mode 100644 index 0000000..b5a82e3 --- /dev/null +++ b/app/gotify/api.py @@ -0,0 +1,75 @@ +import requests +from requests.auth import HTTPBasicAuth + +from django.conf import settings +from .models import GotifyUser + + +def create_user(username: str, password: str) -> dict: + """Creates a user on the Gotify instance. + + :param username: The name of the user to be created. + :param password: The password of the user to be created. + """ + + data = { + 'admin': False, + 'name': username, + 'pass': password + } + + response = requests.post( + url=f"http://{settings.GOTIFY_CONFIG['HOST']}/user", + auth=HTTPBasicAuth( + settings.GOTIFY_CONFIG['USERNAME'], + settings.GOTIFY_CONFIG['PASSWORD'], + ), + json=data + ) + + if response is not None: + response.raise_for_status() + + return response.json() + + +def create_application(username: str, password: str) -> dict: + """Creates an application on the Gotify instance. + + :param username: The user for whom an application will be created. + :param password: The user's password. + """ + + data = { + 'defaultPriority': 6, + 'description': 'A remote patient health monitoring system.', + 'name': 'Medwings' + } + + response = requests.post( + url=f"http://{settings.GOTIFY_CONFIG['HOST']}/application", + auth=HTTPBasicAuth(username, password), + json=data + ) + + if response is not None: + response.raise_for_status() + + return response.json() + + +def upload_application_picture(username: str, password: str, app_id: int): + with open('/app/static/medwings/images/logo/medwings-logo.png', 'rb') as image_file: + response = requests.post( + url=f"http://{settings.GOTIFY_CONFIG['HOST']}/application/{app_id}/image", + auth=HTTPBasicAuth( + username, + password, + ), + files={ + 'file': image_file + } + ) + + if response is not None: + response.raise_for_status() diff --git a/app/gotify/apps.py b/app/gotify/apps.py new file mode 100644 index 0000000..da4dfd6 --- /dev/null +++ b/app/gotify/apps.py @@ -0,0 +1,6 @@ +from django.apps import AppConfig + + +class GotifyConfig(AppConfig): + default_auto_field = 'django.db.models.BigAutoField' + name = 'gotify' diff --git a/backend/routes/__init__.py b/app/gotify/management/__init__.py similarity index 100% rename from backend/routes/__init__.py rename to app/gotify/management/__init__.py diff --git a/backend/schemas/__init__.py b/app/gotify/management/commands/__init__.py similarity index 100% rename from backend/schemas/__init__.py rename to app/gotify/management/commands/__init__.py diff --git a/app/gotify/management/commands/notify_all.py b/app/gotify/management/commands/notify_all.py new file mode 100644 index 0000000..d57e810 --- /dev/null +++ b/app/gotify/management/commands/notify_all.py @@ -0,0 +1,24 @@ +from django.urls import reverse +from django.core.management.base import BaseCommand + +from gotify import models + + +class Command(BaseCommand): + help = 'Notifies all users to take a vitals measurement now.' + + def handle(self, *args, **kwargs): + applications = models.GotifyApplication.objects.all() + + for application in applications: + message_text = f"Hello {application.user.user.first_name}. Please take your next vitals measurement now." + message_title = "Medwings Measurement Prompt" + url = reverse('mews-init') + + message = models.GotifyMessage( + message=message_text, + title=message_title, + url=url + ) + + application.send_message(message) diff --git a/app/gotify/migrations/0001_initial.py b/app/gotify/migrations/0001_initial.py new file mode 100644 index 0000000..caaa452 --- /dev/null +++ b/app/gotify/migrations/0001_initial.py @@ -0,0 +1,32 @@ +# Generated by Django 4.2.3 on 2023-07-30 21:15 + +from django.conf import settings +from django.db import migrations, models +import django.db.models.deletion + + +class Migration(migrations.Migration): + + initial = True + + dependencies = [ + ('auth', '0012_alter_user_first_name_max_length'), + ] + + operations = [ + migrations.CreateModel( + name='GotifyUser', + fields=[ + ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to=settings.AUTH_USER_MODEL)), + ('id', models.PositiveIntegerField(verbose_name='Gotify User ID')), + ], + ), + migrations.CreateModel( + name='GotifyApplication', + fields=[ + ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to='gotify.gotifyuser')), + ('id', models.PositiveIntegerField(verbose_name='Gotify Application ID')), + ('token', models.CharField(max_length=256, verbose_name='Gotify Application Token')), + ], + ), + ] diff --git a/app/gotify/migrations/__init__.py b/app/gotify/migrations/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/gotify/models.py b/app/gotify/models.py new file mode 100644 index 0000000..0f43d5e --- /dev/null +++ b/app/gotify/models.py @@ -0,0 +1,79 @@ +from enum import Enum +import json + +from django.db import models +from django.contrib.auth.models import User +from django.conf import settings +import requests + + +class GotifyUser(models.Model): + user = models.OneToOneField(User, on_delete=models.CASCADE, primary_key=True) + id = models.PositiveIntegerField(verbose_name="Gotify User ID") + + +class GotifyMessageType(Enum): + plain = "text/plain" + markdown = "text/markdown" + + +class GotifyMessage(): + type: GotifyMessageType + message: str + title: str | None + priority: int + url: str | None + + def __init__(self, message: str, title: str | None = None, priority: int = 5, url: str | None = None, type: str = 'text/plain'): + self.message = message + self.title = title + if not 0 <= priority <= 10: + raise ValueError(f"Priority must be 0 to 10.") + self.priority = priority + self.url = url + self.type = GotifyMessageType(type) + + def as_dict(self) -> dict: + obj = { + "message": self.message, + "priority": self.priority, + "extras": { + "client::display": { + "contentType": self.type.value + } + } + } + + if self.title: + obj["title"] = self.title + + if self.url: + obj["extras"]["client::notification"] = { + "click": { + "url": self.url + } + } + + return obj + + +class GotifyApplication(models.Model): + user = models.OneToOneField(GotifyUser, on_delete=models.CASCADE, primary_key=True) + id = models.PositiveIntegerField(verbose_name="Gotify Application ID") + token = models.CharField(max_length=256, verbose_name="Gotify Application Token") + + def send_message(self, message: GotifyMessage): + endpoint_url = f"http://{settings.GOTIFY_CONFIG['HOST']}/message" + headers = { + "Authorization": f"Bearer {self.token}", + "Content-Type": "application/json" + } + + response = requests.post( + url=endpoint_url, + headers=headers, + data=json.dumps(message.as_dict()) + ) + + if response is not None: + response.raise_for_status() diff --git a/app/manage.py b/app/manage.py new file mode 100755 index 0000000..f2a662c --- /dev/null +++ b/app/manage.py @@ -0,0 +1,22 @@ +#!/usr/bin/env python +"""Django's command-line utility for administrative tasks.""" +import os +import sys + + +def main(): + """Run administrative tasks.""" + os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'core.settings') + try: + from django.core.management import execute_from_command_line + except ImportError as exc: + raise ImportError( + "Couldn't import Django. Are you sure it's installed and " + "available on your PYTHONPATH environment variable? Did you " + "forget to activate a virtual environment?" + ) from exc + execute_from_command_line(sys.argv) + + +if __name__ == '__main__': + main() diff --git a/app/medwings/README.md b/app/medwings/README.md new file mode 100644 index 0000000..afe90af --- /dev/null +++ b/app/medwings/README.md @@ -0,0 +1,16 @@ +# Medwings + +This module provides handles vitals data, MEWS calculations and the user interfaces for capturing and viewing the data. + +## MEWS + +The following vital signs need to be recorded for a MEWS calculation: + +* Heart Rate +* SPO2 +* Blood Pressure +* Body Temperature +* Respiration Rate + +A detailed explanation and formula +[can be found here](https://www.mdcalc.com/calc/1875/modified-early-warning-score-mews-clinical-deterioration#evidence). diff --git a/app/medwings/__init__.py b/app/medwings/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/medwings/apps.py b/app/medwings/apps.py new file mode 100644 index 0000000..0a7fdee --- /dev/null +++ b/app/medwings/apps.py @@ -0,0 +1,6 @@ +from django.apps import AppConfig + + +class MedwingsConfig(AppConfig): + default_auto_field = 'django.db.models.BigAutoField' + name = 'medwings' diff --git a/app/medwings/forms.py b/app/medwings/forms.py new file mode 100644 index 0000000..6c3d8d6 --- /dev/null +++ b/app/medwings/forms.py @@ -0,0 +1,18 @@ +from django import forms + +from medwings.models import Profile, RespirationScoreRecord + + +class ProfileForm(forms.ModelForm): + class Meta: + model = Profile + fields = ['date_of_birth', 'sex'] + widgets = { + 'date_of_birth': forms.DateInput(attrs={'type': 'date'}), + } + + +class RespirationScoreForm(forms.ModelForm): + class Meta: + model = RespirationScoreRecord + fields = ['value_severity'] diff --git a/app/medwings/migrations/0001_initial.py b/app/medwings/migrations/0001_initial.py new file mode 100644 index 0000000..5711d5c --- /dev/null +++ b/app/medwings/migrations/0001_initial.py @@ -0,0 +1,87 @@ +# Generated by Django 4.2.3 on 2023-07-30 21:15 + +from django.conf import settings +from django.db import migrations, models +import django.db.models.deletion +import medwings.validators + + +class Migration(migrations.Migration): + + initial = True + + dependencies = [ + migrations.swappable_dependency(settings.AUTH_USER_MODEL), + ('auth', '0012_alter_user_first_name_max_length'), + ] + + operations = [ + migrations.CreateModel( + name='BloodPressureRecord', + fields=[ + ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), + ('recorded', models.DateTimeField(unique=True, validators=[medwings.validators.AbstractRecordValidator.recorded], verbose_name='Time at which measurement was taken')), + ('value_systolic_mmhg', models.PositiveIntegerField(validators=[medwings.validators.BloodPressureRecordValidator.value_systolic_mmhg], verbose_name='Systolic Blood Pressure (mmhg)')), + ('value_diastolic_mmhg', models.PositiveIntegerField(validators=[medwings.validators.BloodPressureRecordValidator.value_diastolic_mmhg], verbose_name='Diastolic Blood Pressure (mmhg)')), + ('user', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), + ], + ), + migrations.CreateModel( + name='BodyTempRecord', + fields=[ + ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), + ('recorded', models.DateTimeField(unique=True, validators=[medwings.validators.AbstractRecordValidator.recorded], verbose_name='Time at which measurement was taken')), + ('value_celsius', models.DecimalField(decimal_places=2, max_digits=5, unique=True, validators=[medwings.validators.BodyTempRecordValidator.value_celsius], verbose_name='Body Temperature (°C)')), + ('user', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), + ], + ), + migrations.CreateModel( + name='HeartRateRecord', + fields=[ + ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), + ('recorded', models.DateTimeField(unique=True, validators=[medwings.validators.AbstractRecordValidator.recorded], verbose_name='Time at which measurement was taken')), + ('value_bpm', models.PositiveIntegerField(validators=[medwings.validators.HeartRateRecordValidator.value_bpm], verbose_name='Heart Rate (bpm)')), + ('user', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), + ], + ), + migrations.CreateModel( + name='Profile', + fields=[ + ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to=settings.AUTH_USER_MODEL)), + ('date_of_birth', models.DateField(validators=[medwings.validators.PersonValidator.date_of_birth], verbose_name='Date of birth')), + ('sex', models.CharField(choices=[('F', 'Female'), ('M', 'Male')], max_length=1, verbose_name='Sex assigned at birth')), + ], + ), + migrations.CreateModel( + name='Spo2LevelRecord', + fields=[ + ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), + ('recorded', models.DateTimeField(unique=True, validators=[medwings.validators.AbstractRecordValidator.recorded], verbose_name='Time at which measurement was taken')), + ('value_percent', models.PositiveIntegerField(validators=[medwings.validators.Spo2LevelRecordValidator.value_percent], verbose_name='SPO2 (%)')), + ('user', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), + ], + ), + migrations.CreateModel( + name='RespirationScoreRecord', + fields=[ + ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), + ('recorded', models.DateTimeField(unique=True, validators=[medwings.validators.AbstractRecordValidator.recorded], verbose_name='Time at which measurement was taken')), + ('value_severity', models.PositiveIntegerField(choices=[(0, 'No shortness of breath'), (1, 'A little shortness of breath'), (2, 'Severe shortness of breath')], validators=[medwings.validators.RespirationScoreRecordValidator.value_severity], verbose_name='Shortness Of Breath Severity')), + ('user', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), + ], + ), + migrations.CreateModel( + name='MewsRecord', + fields=[ + ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')), + ('recorded', models.DateTimeField(unique=True, validators=[medwings.validators.AbstractRecordValidator.recorded], verbose_name='Time at which measurement was calculated')), + ('value_n', models.PositiveIntegerField(validators=[medwings.validators.MewsRecordValidator.value_n], verbose_name='Modified Early Warning Score')), + ('blood_pressure_record', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='medwings.bloodpressurerecord')), + ('body_temp_record', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='medwings.bodytemprecord')), + ('heart_rate_record', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='medwings.heartraterecord')), + ('respiration_score_record', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='medwings.respirationscorerecord')), + ('spo2_level_record', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='medwings.spo2levelrecord')), + ('user', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)), + ], + ), + ] diff --git a/app/medwings/migrations/__init__.py b/app/medwings/migrations/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/medwings/models.py b/app/medwings/models.py new file mode 100644 index 0000000..b362247 --- /dev/null +++ b/app/medwings/models.py @@ -0,0 +1,123 @@ +from django.db import models +from django.contrib.auth.models import User + +from . import validators + + +class Profile(models.Model): + SEX_FEMALE = "F" + SEX_MALE = "M" + SEX_CHOICES = [ + (SEX_FEMALE, "Female"), + (SEX_MALE, "Male") + ] + + user = models.OneToOneField(User, on_delete=models.CASCADE, primary_key=True) + date_of_birth = models.DateField(validators=[validators.PersonValidator.date_of_birth], verbose_name="Date of birth") + sex = models.CharField(max_length=1, choices=SEX_CHOICES, verbose_name="Sex assigned at birth") + + +class BloodPressureRecord(models.Model): + user = models.ForeignKey(User, on_delete=models.CASCADE) + recorded = models.DateTimeField(validators=[validators.BloodPressureRecordValidator.recorded], unique=True, verbose_name="Time at which measurement was taken") + value_systolic_mmhg = models.PositiveIntegerField(validators=[validators.BloodPressureRecordValidator.value_systolic_mmhg], verbose_name="Systolic Blood Pressure (mmhg)") + value_diastolic_mmhg = models.PositiveIntegerField(validators=[validators.BloodPressureRecordValidator.value_diastolic_mmhg], verbose_name="Diastolic Blood Pressure (mmhg)") + + +class BodyTempRecord(models.Model): + user = models.ForeignKey(User, on_delete=models.CASCADE) + recorded = models.DateTimeField(validators=[validators.BodyTempRecordValidator.recorded], unique=True, verbose_name="Time at which measurement was taken") + value_celsius = models.DecimalField(max_digits=5, decimal_places=2, validators=[validators.BodyTempRecordValidator.value_celsius], unique=True, verbose_name="Body Temperature (\u00B0C)") + + +class HeartRateRecord(models.Model): + user = models.ForeignKey(User, on_delete=models.CASCADE) + recorded = models.DateTimeField(validators=[validators.HeartRateRecordValidator.recorded], unique=True, verbose_name="Time at which measurement was taken") + value_bpm = models.PositiveIntegerField(validators=[validators.HeartRateRecordValidator.value_bpm], verbose_name="Heart Rate (bpm)") + + +class Spo2LevelRecord(models.Model): + user = models.ForeignKey(User, on_delete=models.CASCADE) + recorded = models.DateTimeField(validators=[validators.Spo2LevelRecordValidator.recorded], unique=True, verbose_name="Time at which measurement was taken") + value_percent = models.PositiveIntegerField(validators=[validators.Spo2LevelRecordValidator.value_percent], verbose_name="SPO2 (\u0025)") + + +class RespirationScoreRecord(models.Model): + SEVERITY_NONE = 0 + SEVERITY_LOW = 1 + SEVERITY_HIGH = 2 + SEVERITY_CHOICES = [ + (SEVERITY_NONE, "No shortness of breath"), + (SEVERITY_LOW, "A little shortness of breath"), + (SEVERITY_HIGH, "Severe shortness of breath"), + ] + + user = models.ForeignKey(User, on_delete=models.CASCADE) + recorded = models.DateTimeField(validators=[validators.RespirationScoreRecordValidator.recorded], unique=True, verbose_name="Time at which measurement was taken") + value_severity = models.PositiveIntegerField(choices=SEVERITY_CHOICES, validators=[validators.RespirationScoreRecordValidator.value_severity], verbose_name="Shortness Of Breath Severity") + + +class MewsRecord(models.Model): + user = models.ForeignKey(User, on_delete=models.CASCADE) + recorded = models.DateTimeField(validators=[validators.MewsRecordValidator.recorded], unique=True, verbose_name="Time at which measurement was calculated") + value_n = models.PositiveIntegerField(validators=[validators.MewsRecordValidator.value_n], verbose_name="Modified Early Warning Score") + + blood_pressure_record = models.ForeignKey(BloodPressureRecord, on_delete=models.CASCADE) + body_temp_record = models.ForeignKey(BodyTempRecord, on_delete=models.CASCADE) + heart_rate_record = models.ForeignKey(HeartRateRecord, on_delete=models.CASCADE) + spo2_level_record = models.ForeignKey(Spo2LevelRecord, on_delete=models.CASCADE) + respiration_score_record = models.ForeignKey(RespirationScoreRecord, on_delete=models.CASCADE) + + + @staticmethod + def calculate_mews_value( + blood_pressure_systolic_value_mmhg: int, + body_temp_value_celsius: float, + heart_rate_value_bpm: int, + spo2_level_value_percent: int, + respiration_score_value_severity: int, + ): + mews_value = 0 + + if blood_pressure_systolic_value_mmhg <= 70: + mews_value += 3 + elif blood_pressure_systolic_value_mmhg <= 80: + mews_value += 2 + elif blood_pressure_systolic_value_mmhg <= 100: + mews_value += 1 + elif blood_pressure_systolic_value_mmhg < 200: + mews_value += 0 + else: + mews_value += 2 + + if heart_rate_value_bpm < 40: + mews_value += 2 + elif heart_rate_value_bpm <= 50: + mews_value += 1 + elif heart_rate_value_bpm <= 100: + mews_value += 0 + elif heart_rate_value_bpm <= 110: + mews_value += 1 + elif heart_rate_value_bpm < 130: + mews_value += 2 + else: + mews_value += 3 + + if respiration_score_value_severity == 1: + mews_value += 1 + elif respiration_score_value_severity == 2: + mews_value += 2 + + if spo2_level_value_percent < 90: + mews_value += 2 + elif spo2_level_value_percent < 95: + mews_value += 1 + + if body_temp_value_celsius < 35: + mews_value += 2 + elif body_temp_value_celsius <= 38.4: + mews_value += 0 + else: + mews_value += 2 + + return mews_value diff --git a/app/medwings/templates/medwings/dashboard.html b/app/medwings/templates/medwings/dashboard.html new file mode 100644 index 0000000..e28191a --- /dev/null +++ b/app/medwings/templates/medwings/dashboard.html @@ -0,0 +1,146 @@ +{% extends 'core/base.html' %} +{% load static %} +{% block title %} + Medwings | Dashboard +{% endblock title %} + +{% block content %} +
+ +

Dashboard

+

This page shows all of your recorded health data.

+ +
+

MEWS

+ {% if mews_data %} + + {% else %} +
+

There is no data yet

+
+ {% endif %} +
+ +
+

Blood Pressure

+ {% if blood_pressure_data %} + + {% else %} +
+

There is no data yet

+
+ {% endif %} +
+ +
+

Body Temperature

+ {% if body_temp_data %} + + {% else %} +
+

There is no data yet

+
+ {% endif %} +
+ +
+

Heart Rate

+ {% if heart_rate_data %} + + {% else %} +
+

There is no data yet

+
+ {% endif %} +
+ +
+

Blood Oxygenation

+ {% if spo2_level_data %} + + {% else %} +
+

There is no data yet

+
+ {% endif %} +
+ +
+

Respiration Score

+ {% if respiration_score_data %} + + {% else %} +
+

There is no data yet

+
+ {% endif %} +
+ +
+ + + + + +{% endblock content %} diff --git a/app/medwings/templates/medwings/index.html b/app/medwings/templates/medwings/index.html new file mode 100644 index 0000000..155dafd --- /dev/null +++ b/app/medwings/templates/medwings/index.html @@ -0,0 +1,56 @@ +{% extends 'core/base.html' %} +{% load static %} +{% block title %} + Medwings | Home +{% endblock title %} + +{% block content %} +
+
+ +
+

MedwingS

+
+
+

The Mobile Early Deterioration Warning System

+

+ We understand that after receiving medical care, you may still have concerns about your health, particularly if you're at + risk of sudden health changes. + That's where we come in. +

+

+ Our platform leverages smart medical sensor devices to keep track of your vital signs - such as heart rate, + blood pressure, and body temperature - providing you and your healthcare team with a detailed and continuous + picture of your health status. +

+
+ {% if not request.user.is_authenticated %} +

To use the platform, please log in. If you do not have an account yet, please register.

+
+ Log In + Register +
+ {% else %} +

View your latest health data to stay up to date:

+ Go to your personal dashboard + {% endif %} +
+

+ Our unique feature is the ability to calculate your Modified Early Warning Score (MEWS) from your vitals data. + This system is used widely in healthcare settings to detect early signs of deterioration. + Now, it is available for you, right in the comfort of your home or on the go. +

+

+ Prompted by periodic reminders, you'll be asked to take measurements which will be sent automatically to our platform. + Here, we calculate your MEWS and generate alerts if we detect an increased risk of health deterioration. +

+

+ While we take care of your monitoring needs, you can enjoy your daily activities with peace of mind, knowing that a + dedicated team has your health in their sights. + Stay in control of your health with us, your personal health guardian. +

+

+ Welcome aboard! +

+
+{% endblock content %} diff --git a/app/medwings/templates/medwings/mews-continue.html b/app/medwings/templates/medwings/mews-continue.html new file mode 100644 index 0000000..e5ca8db --- /dev/null +++ b/app/medwings/templates/medwings/mews-continue.html @@ -0,0 +1,210 @@ +{% extends 'core/base.html' %} +{% load static %} +{% load widget_tweaks %} +{% block title %} + Medwings | Take a measurement +{% endblock title %} + +{% block content %} +
+

Record your health status

+
+

Please start measuring your vitals using your devices now.

+

Your measurement results will be synchronized automatically.

+ + +
+
+
+

Blood Pressure (systolic)

+
+
+ + +
+
+

Body Temperature

+
+
+ + +
+
+

Heart Rate

+
+
+ + +
+
+

Blood Oxygenation

+
+
+ + +
+
+

Respiration Score

+
+
+ + +
+
+

MEWS

+
+
+ +
+
+ +{% endblock content %} diff --git a/app/medwings/templates/medwings/mews-init.html b/app/medwings/templates/medwings/mews-init.html new file mode 100644 index 0000000..9977afd --- /dev/null +++ b/app/medwings/templates/medwings/mews-init.html @@ -0,0 +1,51 @@ +{% extends 'core/base.html' %} +{% load static %} +{% load widget_tweaks %} +{% block title %} + Medwings | Take a measurement +{% endblock title %} + +{% block content %} +
+

Record your health status

+
+
+ A Withings BPM core. + A Withings Thermo. + A Withings Scanwatch. +
+

Before you begin, please have your Withings devices ready for taking measurements.

+
+
+ {% csrf_token %} +
+ To get started, please answer the following question: + + {% if respiration_score_form.non_field_errors %} +
+ {% for error in respiration_score_form.non_field_errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} + + +
+ + {% render_field respiration_score_form.value_severity|add_error_class:"error" %} +
+ {% if respiration_score_form.value_severity.errors %} +
+ {% for error in respiration_score_form.value_severity.errors %} +

{{ error }}

+ {% endfor %} +
+ {% endif %} + + +
+
+
+{% endblock content %} diff --git a/app/medwings/urls.py b/app/medwings/urls.py new file mode 100644 index 0000000..7a2630a --- /dev/null +++ b/app/medwings/urls.py @@ -0,0 +1,11 @@ +from django.urls import path + +from . import views + +urlpatterns = [ + path("", views.index, name="home"), + path("dashboard/", views.dashboard, name="dashboard"), + path("mews/init/", views.mews_init, name="mews-init"), + path("mews/continue/", views.mews_continue, name="mews-continue"), + path("mews/status/", views.mews_status, name="mews-status"), +] diff --git a/app/medwings/validators.py b/app/medwings/validators.py new file mode 100644 index 0000000..d940b15 --- /dev/null +++ b/app/medwings/validators.py @@ -0,0 +1,109 @@ +from datetime import date, datetime +from abc import ABC + +from django.core.exceptions import ValidationError + + +class DateValidator: + @staticmethod + def past_date(value: date, name: str = "date"): + if value > date.today(): + raise ValidationError(f"The {name} cannot be in the future.") + + @staticmethod + def past_datetime(value: datetime, name: str = "timestamp"): + if value > datetime.now(): + raise ValidationError(f"The {name} cannot be in the future.") + + +class PersonValidator: + @staticmethod + def date_of_birth(value): + DateValidator.past_date(value, "date of birth") + + +class AbstractRecordValidator(ABC): + @staticmethod + def recorded(value): + DateValidator.past_datetime(value, "time when the value was recorded") + + +class BloodPressureRecordValidator(AbstractRecordValidator): + MIN_VALUE_SYSTOLIC_MMHG = 0 + MAX_VALUE_SYSTOLIC_MMHG = 1000 + MIN_VALUE_DIASTOLIC_MMHG = 0 + MAX_VALUE_DIASTOLIC_MMHG = 1000 + + @staticmethod + def value_systolic_mmhg(value: int): + if value < BloodPressureRecordValidator.MIN_VALUE_SYSTOLIC_MMHG: + raise ValidationError(f"Systolic Blood Pressure cannot be below {BloodPressureRecordValidator.MIN_VALUE_SYSTOLIC_MMHG}") + if value > BloodPressureRecordValidator.MAX_VALUE_SYSTOLIC_MMHG: + raise ValidationError(f"Systolic Blood Pressure cannot be above {BloodPressureRecordValidator.MAX_VALUE_SYSTOLIC_MMHG}") + + @staticmethod + def value_diastolic_mmhg(value: int): + if value < BloodPressureRecordValidator.MIN_VALUE_DIASTOLIC_MMHG: + raise ValidationError(f"Diastolic Blood Pressure cannot be below {BloodPressureRecordValidator.MIN_VALUE_DIASTOLIC_MMHG}") + if value > BloodPressureRecordValidator.MAX_VALUE_DIASTOLIC_MMHG: + raise ValidationError(f"Diastolic Blood Pressure cannot be above {BloodPressureRecordValidator.MAX_VALUE_DIASTOLIC_MMHG}") + + +class BodyTempRecordValidator(AbstractRecordValidator): + MIN_VALUE_CELSIUS = 0 + MAX_VALUE_CELSIUS = 100 + + @staticmethod + def value_celsius(value: int): + if value < BodyTempRecordValidator.MIN_VALUE_CELSIUS: + raise ValidationError(f"Body Temperature cannot be below {BodyTempRecordValidator.MIN_VALUE_CELSIUS}") + if value > BodyTempRecordValidator.MAX_VALUE_CELSIUS: + raise ValidationError(f"Body Temperature cannot be above {BodyTempRecordValidator.MAX_VALUE_CELSIUS}") + + +class HeartRateRecordValidator(AbstractRecordValidator): + MIN_VALUE_BPM = 0 + MAX_VALUE_BPM = 1000 + + @staticmethod + def value_bpm(value: int): + if value < HeartRateRecordValidator.MIN_VALUE_BPM: + raise ValidationError(f"Heart Rate cannot be below {HeartRateRecordValidator.MIN_VALUE_BPM}") + if value > HeartRateRecordValidator.MAX_VALUE_BPM: + raise ValidationError(f"Heart Rate cannot be above {HeartRateRecordValidator.MAX_VALUE_BPM}") + + +class RespirationScoreRecordValidator(AbstractRecordValidator): + MIN_VALUE_SEVERITY = 0 + MAX_VALUE_SEVERITY = 2 + + @staticmethod + def value_severity(value: int): + if value < RespirationScoreRecordValidator.MIN_VALUE_SEVERITY: + raise ValidationError(f"Respiratory Inhibition Severity cannot be below {RespirationScoreRecordValidator.MIN_VALUE_SEVERITY}") + if value > RespirationScoreRecordValidator.MAX_VALUE_SEVERITY: + raise ValidationError(f"Respiratory Inhibition Severity cannot be above {RespirationScoreRecordValidator.MAX_VALUE_SEVERITY}") + + +class Spo2LevelRecordValidator(AbstractRecordValidator): + MIN_VALUE_PERCENT = 0 + MAX_VALUE_PERCENT = 100 + + @staticmethod + def value_percent(value: int): + if value < Spo2LevelRecordValidator.MIN_VALUE_PERCENT: + raise ValidationError(f"SPO2 cannot be below {Spo2LevelRecordValidator.MIN_VALUE_PERCENT}") + if value > Spo2LevelRecordValidator.MAX_VALUE_PERCENT: + raise ValidationError(f"SPO2 cannot be above {Spo2LevelRecordValidator.MAX_VALUE_PERCENT}") + + +class MewsRecordValidator(AbstractRecordValidator): + MIN_VALUE_N = 0 + MAX_VALUE_N = 100 + + @staticmethod + def value_n(value: int): + if value < MewsRecordValidator.MIN_VALUE_N: + raise ValidationError(f"MEWS cannot be below {MewsRecordValidator.MIN_VALUE_N}") + if value > MewsRecordValidator.MAX_VALUE_N: + raise ValidationError(f"MEWS cannot be above {MewsRecordValidator.MAX_VALUE_N}") diff --git a/app/medwings/views.py b/app/medwings/views.py new file mode 100644 index 0000000..7832929 --- /dev/null +++ b/app/medwings/views.py @@ -0,0 +1,117 @@ +from datetime import timedelta +import json + +from django.shortcuts import redirect, render +from django.http import HttpResponse, JsonResponse +from django.contrib.auth.decorators import login_required +from django.views.decorators.http import require_http_methods +from django.utils import timezone + +from . import models +from . import forms + + +@require_http_methods(["GET"]) +def index(request): + return render(request, 'medwings/index.html') + + +@login_required +@require_http_methods(["GET"]) +def dashboard(request): + mews_records = models.MewsRecord.objects.filter(user=request.user) + blood_pressure_records = models.BloodPressureRecord.objects.filter(user=request.user) + body_temp_records = models.BodyTempRecord.objects.filter(user=request.user) + heart_rate_records = models.HeartRateRecord.objects.filter(user=request.user) + spo2_level_records = models.Spo2LevelRecord.objects.filter(user=request.user) + respiration_score_records = models.RespirationScoreRecord.objects.filter(user=request.user) + + context = { + "mews_data": json.dumps([{"x": record.recorded.timestamp(), "y": record.value_n} for record in mews_records]), + "blood_pressure_data": json.dumps([{"x": record.recorded.timestamp(), "y": record.value_systolic_mmhg} for record in blood_pressure_records]), + "body_temp_data": json.dumps([{"x": record.recorded.timestamp(), "y": float(record.value_celsius)} for record in body_temp_records]), + "heart_rate_data": json.dumps([{"x": record.recorded.timestamp(), "y": record.value_bpm} for record in heart_rate_records]), + "spo2_level_data": json.dumps([{"x": record.recorded.timestamp(), "y": record.value_percent} for record in spo2_level_records]), + "respiration_score_data": json.dumps([{"x": record.recorded.timestamp(), "y": record.value_severity} for record in respiration_score_records]), + } + + return render(request, 'medwings/dashboard.html', context) + + +@login_required +@require_http_methods(["GET", "POST"]) +def mews_init(request): + if request.method == 'POST': + respiration_score_form = forms.RespirationScoreForm(request.POST) + + if respiration_score_form.is_valid(): + respiration_score = respiration_score_form.save(commit=False) + respiration_score.recorded = timezone.now() + respiration_score.user = request.user + respiration_score.save() + + return redirect('mews-continue') + + else: + respiration_score_form = forms.RespirationScoreForm() + + context = { + 'respiration_score_form': respiration_score_form, + } + + return render(request, 'medwings/mews-init.html', context) + + +@login_required +def mews_continue(request): + return render(request, 'medwings/mews-continue.html') + + +@require_http_methods(["GET"]) +def mews_status(request): + if not request.user.is_authenticated: + return HttpResponse('Unauthorized', status=401) + + request.user.apiaccount.update_records() + + ten_minutes_ago = timezone.now() - timedelta(minutes=10) + blood_pressure_record = models.BloodPressureRecord.objects.filter(user=request.user).filter(recorded__gte=ten_minutes_ago).order_by('-recorded').first() + body_temp_record = models.BodyTempRecord.objects.filter(user=request.user).filter(recorded__gte=ten_minutes_ago).order_by('-recorded').first() + heart_rate_record = models.HeartRateRecord.objects.filter(user=request.user).filter(recorded__gte=ten_minutes_ago).order_by('-recorded').first() + spo2_level_record = models.Spo2LevelRecord.objects.filter(user=request.user).filter(recorded__gte=ten_minutes_ago).order_by('-recorded').first() + respiration_score_record = models.RespirationScoreRecord.objects.filter(user=request.user).filter(recorded__gte=ten_minutes_ago).order_by('-recorded').first() + + data = { + 'blood_pressure_value': blood_pressure_record.value_systolic_mmhg if blood_pressure_record else None, + 'body_temp_value': body_temp_record.value_celsius if body_temp_record else None, + 'heart_rate_value': heart_rate_record.value_bpm if heart_rate_record else None, + 'spo2_level_value': spo2_level_record.value_percent if spo2_level_record else None, + 'respiration_score_value': respiration_score_record.value_severity if respiration_score_record else None, + 'mews_value': None, + } + + if (blood_pressure_record + and body_temp_record + and heart_rate_record + and spo2_level_record + and respiration_score_record + ): + mews_record = models.MewsRecord( + user=request.user, recorded=timezone.now(), + value_n=models.MewsRecord.calculate_mews_value( + blood_pressure_record.value_systolic_mmhg, + body_temp_record.value_celsius, + heart_rate_record.value_bpm, + spo2_level_record.value_percent, + respiration_score_record.value_severity + ), + blood_pressure_record=blood_pressure_record, + body_temp_record=body_temp_record, + heart_rate_record=heart_rate_record, + respiration_score_record=respiration_score_record, + spo2_level_record=spo2_level_record + ) + mews_record.save() + data['mews_value'] = mews_record.value_n + + return JsonResponse(data) diff --git a/app/requirements.txt b/app/requirements.txt new file mode 100644 index 0000000..72d30a5 --- /dev/null +++ b/app/requirements.txt @@ -0,0 +1,14 @@ +asgiref==3.7.2 +certifi==2023.7.22 +charset-normalizer==3.2.0 +Django==4.2.3 +django-widget-tweaks==1.4.12 +djangorestframework==3.14.0 +idna==3.4 +psycopg==3.1.9 +psycopg-binary==3.1.9 +pytz==2023.3 +requests==2.31.0 +sqlparse==0.4.4 +typing_extensions==4.7.1 +urllib3==2.0.4 diff --git a/public/static/images/devices/36b60fc2-567f-4e7e-b76e-2a9006c0f0fb.webp b/app/static/medwings/images/devices/withings-bpm-core.webp similarity index 100% rename from public/static/images/devices/36b60fc2-567f-4e7e-b76e-2a9006c0f0fb.webp rename to app/static/medwings/images/devices/withings-bpm-core.webp diff --git a/public/static/images/devices/133184d2-3b7c-4589-bc76-9736455a56b9.webp b/app/static/medwings/images/devices/withings-scanwatch.webp similarity index 100% rename from public/static/images/devices/133184d2-3b7c-4589-bc76-9736455a56b9.webp rename to app/static/medwings/images/devices/withings-scanwatch.webp diff --git a/public/static/images/devices/3b0cd959-a293-488f-94d6-5f6dc0f775f3.webp b/app/static/medwings/images/devices/withings-thermo.webp similarity index 100% rename from public/static/images/devices/3b0cd959-a293-488f-94d6-5f6dc0f775f3.webp rename to app/static/medwings/images/devices/withings-thermo.webp diff --git a/app/static/medwings/images/logo/medwings-logo.png b/app/static/medwings/images/logo/medwings-logo.png new file mode 100644 index 0000000..0cc185a Binary files /dev/null and b/app/static/medwings/images/logo/medwings-logo.png differ diff --git a/app/static/medwings/images/logo/medwings-logo.svg b/app/static/medwings/images/logo/medwings-logo.svg new file mode 100644 index 0000000..fbc9c8c --- /dev/null +++ b/app/static/medwings/images/logo/medwings-logo.svg @@ -0,0 +1,154 @@ + + diff --git a/app/static/medwings/images/misc/hamburger.svg b/app/static/medwings/images/misc/hamburger.svg new file mode 100644 index 0000000..26452b8 --- /dev/null +++ b/app/static/medwings/images/misc/hamburger.svg @@ -0,0 +1,31 @@ + + + + + + + diff --git a/app/withings/README.md b/app/withings/README.md new file mode 100644 index 0000000..143c941 --- /dev/null +++ b/app/withings/README.md @@ -0,0 +1,235 @@ +# Withings + +This module provides interfaces used to communicate with the Withings Public API. + +## Smart Devices Used + +We use the following devices for vitals data measurement: + +* [Withings Scanwatch](https://www.withings.com/de/en/scanwatch) + * Heart Rate, SPO2 +* [Withings Thermo](https://www.withings.com/de/en/thermo) + * Body Surface Temperature +* [WIthings BPM Core](https://www.withings.com/de/en/bpm-core) + * Blood Pressure + +## API Access + +Data is gathered by taking measurements using the devices, either actively (BP sleeve, thermometer) or passively (smartwatch). +The devices are connected to the Withings mobile app. +The mobile app then regularly pushes gathered data to the Withings cloud. + +The Withings Dev Free plan allows for 120 API requests per minute. +Access to vitals data is available through the [Withings API](https://developer.withings.com/). + +A detailed [API integration guide](https://developer.withings.com/developer-guide/v3/integration-guide/public-health-data-api/public-health-data-api-overview/), +as well as an [API reference guide](https://developer.withings.com/api-reference) are available online. + +### Token expiry + +When the access token expires, HTTP status `200 OK` is returned, but the response body is as follows: + +```json +{ + "status": 401, + "body": {}, + "error": "XRequestID: Not provided invalid_token: The access token provided is invalid" +} +``` + +### Fetching health data + +Health records can be fetched via GET request as follows: + +```http +https://wbsapi.withings.net/measure?action=getmeas&meastypes=9,10,54,71,11 +``` + +The type of vitals measurement is mapped as follows: + +| Code | Type | Unit | +|------|--------------------------|------| +| 9 | Diastolic Blood Pressure | mmHg | +| 10 | Systolic Blood Pressure | mmHg | +| 11 | Heart Rate | bpm | +| 54 | SP02 | % | +| 71 | Body Temperature | °C | + +Note the `unit`-field in the response. +For body temperature, the `unit`-field has the value `-3`. +This means that to get the body temperature in °C, you must multiply the `value` by `10^(-3)`. + +The time of measurement can be parsed from the `measuregrps`'s `date` field. + +A successful response looks like so: + +```json +{ + "status": 0, + "body": { + "updatetime": 1690491663, + "timezone": "Europe/Berlin", + "measuregrps": [ + { + "grpid": 4716596696, + "attrib": 0, + "date": 1690491576, + "created": 1690491663, + "modified": 1690491663, + "category": 1, + "deviceid": "c405eb8e0e053f6601e151c7e43c04e29aad6956", + "hash_deviceid": "c405eb8e0e053f6601e151c7e43c04e29aad6956", + "measures": [ + { + "value": 89, + "type": 9, + "unit": 0, + "algo": 0, + "fm": 3 + }, + { + "value": 109, + "type": 10, + "unit": 0, + "algo": 0, + "fm": 3 + }, + { + "value": 88, + "type": 11, + "unit": 0, + "algo": 0, + "fm": 3 + } + ], + "modelid": 44, + "model": "BPM Core", + "comment": null + }, + { + "grpid": 4716596681, + "attrib": 0, + "date": 1690491236, + "created": 1690491662, + "modified": 1690491662, + "category": 1, + "deviceid": "c405eb8e0e053f6601e151c7e43c04e29aad6956", + "hash_deviceid": "c405eb8e0e053f6601e151c7e43c04e29aad6956", + "measures": [ + { + "value": 65, + "type": 9, + "unit": 0, + "algo": 0, + "fm": 3 + }, + { + "value": 92, + "type": 10, + "unit": 0, + "algo": 0, + "fm": 3 + }, + { + "value": 88, + "type": 11, + "unit": 0, + "algo": 0, + "fm": 3 + } + ], + "modelid": 44, + "model": "BPM Core", + "comment": null + }, + { + "grpid": 4712963495, + "attrib": 0, + "date": 1690375238, + "created": 1690375243, + "modified": 1690375243, + "category": 1, + "deviceid": "dbf7f61809d5fb350a16a50f6af6e826f0746082", + "hash_deviceid": "dbf7f61809d5fb350a16a50f6af6e826f0746082", + "measures": [ + { + "value": 99, + "type": 54, + "unit": 0, + "algo": 33619971, + "fm": 3, + "apppfmid": 9, + "appliver": 2741, + "algo_params": { + "1": 0, + "2": 15 + } + } + ], + "modelid": null, + "model": null, + "comment": null, + "is_inconclusive": false + }, + { + "grpid": 4712927310, + "attrib": 1, + "date": 1690374434, + "created": 1690374456, + "modified": 1690374486, + "category": 1, + "deviceid": "1d453daf947378fac40677e7a085eea73750b061", + "hash_deviceid": "1d453daf947378fac40677e7a085eea73750b061", + "measures": [ + { + "value": 37370, + "type": 71, + "unit": -3, + "algo": 0, + "fm": 0 + } + ], + "modelid": null, + "model": null, + "comment": null + }, + { + "grpid": 4712911433, + "attrib": 0, + "date": 1690373994, + "created": 1690374078, + "modified": 1690374078, + "category": 1, + "deviceid": "c405eb8e0e053f6601e151c7e43c04e29aad6956", + "hash_deviceid": "c405eb8e0e053f6601e151c7e43c04e29aad6956", + "measures": [ + { + "value": 88, + "type": 9, + "unit": 0, + "algo": 0, + "fm": 3 + }, + { + "value": 124, + "type": 10, + "unit": 0, + "algo": 0, + "fm": 3 + }, + { + "value": 70, + "type": 11, + "unit": 0, + "algo": 0, + "fm": 3 + } + ], + "modelid": null, + "model": null, + "comment": null + } + ] + } +} +``` diff --git a/app/withings/__init__.py b/app/withings/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/withings/api.py b/app/withings/api.py new file mode 100644 index 0000000..8d4fdfc --- /dev/null +++ b/app/withings/api.py @@ -0,0 +1,116 @@ +from datetime import datetime, timedelta +from random import randint + +import requests +import pytz +from django.conf import settings +from django.utils import timezone +from django.contrib.auth.models import User +from urllib.parse import urlencode + +from medwings import models as mm + +def fetch_initial_tokens(authorization_code, redirect_uri): + data = { + 'action': 'requesttoken', + 'client_id': settings.WITHINGS_CONFIG['CLIENT_ID'], + 'client_secret': settings.WITHINGS_CONFIG['CLIENT_SECRET'], + 'grant_type': 'authorization_code', + 'code': authorization_code, + 'redirect_uri': redirect_uri + } + response = requests.post( + url=settings.WITHINGS_CONFIG['ENDPOINT_URL_OAUTH2'], + json=data + ) + if response is not None: + response.raise_for_status() + + return response.json() + + +def mock_fetch_initial_tokens(authorization_code, redirect_uri): + response = { + "status": 0, + "body": { + "userid": f"{randint(1, 5000)}", + "access_token": "a075f8c14fb8df40b08ebc8508533dc332a6910a", + "refresh_token": "f631236f02b991810feb774765b6ae8e6c6839ca", + "expires_in": 10800, + "scope": "user.info,user.metrics", + "csrf_token": "PACnnxwHTaBQOzF7bQqwFUUotIuvtzSM", + "token_type": "Bearer" + } + } + return response + + +def save_tokens_to_session(request, response_data): + request.session['withings_userid'] = response_data['body']['userid'] + request.session['withings_access_token'] = response_data['body']['access_token'] + request.session['withings_refresh_token'] = response_data['body']['refresh_token'] + + now = timezone.now() + request.session['withings_access_token_expiry'] = (now + timedelta(seconds=response_data['body']['expires_in'])).isoformat() + request.session['withings_refresh_token_expiry'] = (now + timedelta(days=365)).isoformat() + + +def parse_getmeas_response(response_body: dict, user: User) -> list: + body = response_body['body'] + records = [] + + timezone = pytz.timezone(body['timezone']) + + for measure_group in body['measuregrps']: + recorded = timezone.localize(datetime.fromtimestamp(measure_group['date'])) + + blood_pressure_systolic_value = None + blood_pressure_diastolic_value = None + body_temperature_value = None + heart_rate_value = None + spo2_level_value = None + for measure in measure_group['measures']: + measure_type = measure['type'] + measure_value = measure['value'] + measure_unit = measure['unit'] + + measure_value_adjusted = measure_value * (10 ** measure_unit) + + if measure_type == 9: + blood_pressure_diastolic_value = measure_value_adjusted + elif measure_type == 10: + blood_pressure_systolic_value = measure_value_adjusted + elif measure_type == 11: + heart_rate_value = measure_value_adjusted + elif measure_type == 54: + spo2_level_value = measure_value_adjusted + elif measure_type == 71: + body_temperature_value = measure_value_adjusted + + if blood_pressure_systolic_value and blood_pressure_diastolic_value: + records.append(mm.BloodPressureRecord( + user=user, + recorded=recorded, + value_systolic_mmhg=blood_pressure_systolic_value, + value_diastolic_mmhg=blood_pressure_diastolic_value + )) + if body_temperature_value: + records.append(mm.BodyTempRecord( + user=user, + recorded=recorded, + value_celsius=body_temperature_value + )) + if heart_rate_value: + records.append(mm.HeartRateRecord( + user=user, + recorded=recorded, + value_bpm=heart_rate_value + )) + if spo2_level_value: + records.append(mm.Spo2LevelRecord( + user=user, + recorded=recorded, + value_percent=spo2_level_value + )) + + return records diff --git a/app/withings/apps.py b/app/withings/apps.py new file mode 100644 index 0000000..d1847ce --- /dev/null +++ b/app/withings/apps.py @@ -0,0 +1,6 @@ +from django.apps import AppConfig + + +class WithingsConfig(AppConfig): + default_auto_field = 'django.db.models.BigAutoField' + name = 'withings' diff --git a/app/withings/migrations/0001_initial.py b/app/withings/migrations/0001_initial.py new file mode 100644 index 0000000..c6e8861 --- /dev/null +++ b/app/withings/migrations/0001_initial.py @@ -0,0 +1,41 @@ +# Generated by Django 4.2.3 on 2023-07-30 21:15 + +from django.conf import settings +from django.db import migrations, models +import django.db.models.deletion + + +class Migration(migrations.Migration): + + initial = True + + dependencies = [ + ('auth', '0012_alter_user_first_name_max_length'), + ] + + operations = [ + migrations.CreateModel( + name='ApiAccount', + fields=[ + ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to=settings.AUTH_USER_MODEL)), + ('userid', models.PositiveIntegerField(verbose_name='Withings API User ID')), + ('last_update', models.DateTimeField(default=None, null=True, verbose_name='Time of last synchronization with Withings API')), + ], + ), + migrations.CreateModel( + name='AccessToken', + fields=[ + ('account', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to='withings.apiaccount')), + ('value', models.CharField(max_length=256, verbose_name='Withings API Access Token')), + ('expires', models.DateTimeField(verbose_name='Time of expiration')), + ], + ), + migrations.CreateModel( + name='RefreshToken', + fields=[ + ('account', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to='withings.apiaccount')), + ('value', models.CharField(max_length=256, verbose_name='Withings API Refresh Token')), + ('expires', models.DateTimeField(verbose_name='Time of expiration')), + ], + ), + ] diff --git a/app/withings/migrations/__init__.py b/app/withings/migrations/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/withings/models.py b/app/withings/models.py new file mode 100644 index 0000000..23d35d3 --- /dev/null +++ b/app/withings/models.py @@ -0,0 +1,90 @@ +from datetime import datetime, timedelta + +from django.db import models, IntegrityError +from django.contrib.auth.models import User +from django.conf import settings +from django.utils import timezone +import requests + +from . import api + + +class AccessToken(models.Model): + account = models.OneToOneField("ApiAccount", on_delete=models.CASCADE, primary_key=True) + value = models.CharField(max_length=256, verbose_name="Withings API Access Token") + expires = models.DateTimeField(verbose_name="Time of expiration") + + +class RefreshToken(models.Model): + account = models.OneToOneField("ApiAccount", on_delete=models.CASCADE, primary_key=True) + value = models.CharField(max_length=256, verbose_name="Withings API Refresh Token") + expires = models.DateTimeField(verbose_name="Time of expiration") + + +class ApiAccount(models.Model): + user = models.OneToOneField(User, on_delete=models.CASCADE, primary_key=True) + userid = models.PositiveIntegerField(verbose_name="Withings API User ID") + last_update = models.DateTimeField(null=True, default=None, verbose_name="Time of last synchronization with Withings API") + + def refresh_tokens(self): + data = { + 'action': 'requesttoken', + 'client_id': settings.WITHINGS_CONFIG['CLIENT_ID'], + 'client_secret': settings.WITHINGS_CONFIG['CLIENT_SECRET'], + 'grant_type': 'refresh_token', + 'refresh_token': self.refreshtoken.value + } + response = requests.post( + url=settings.WITHINGS_CONFIG['ENDPOINT_URL_OAUTH2'], + json=data + ) + + if response is not None: + response.raise_for_status() + response_data = response.json() + + now = timezone.now() + self.accesstoken.value = response_data['body']['access_token'] + self.accesstoken.expires = now + timedelta(seconds=response_data['body']['expires_in']) + self.refreshtoken.value = response_data['body']['refresh_token'] + self.refreshtoken.expires = now + timedelta(days=365) + self.accesstoken.save() + self.refreshtoken.save() + + + def get_measurements(self, since: datetime | None = None) -> list: + if self.accesstoken.expires < timezone.now(): + self.refresh_tokens() + + params={ + 'action': 'getmeas', + 'meastypes': '9,10,11,54,71' + } + if since: + params['lastupdate'] = str(int(since.timestamp())) + + response = requests.get( + url="https://wbsapi.withings.net/measure", + params=params, + headers={ + 'Authorization': f"Bearer {self.accesstoken.value}" + } + ) + if response is not None: + response.raise_for_status() + data = response.json() + if data['status'] != 0: + raise RuntimeError(f"Received status {data['status']} while retrieving measurements: {data['error']}") + + return api.parse_getmeas_response(data, self.user) + + + def update_records(self): + records = self.get_measurements(self.last_update) + for record in records: + try: + record.save() + except IntegrityError: + pass + self.last_update = timezone.now() + self.save() diff --git a/frontend/src/css/fonts.css b/assets/css/fonts.css similarity index 53% rename from frontend/src/css/fonts.css rename to assets/css/fonts.css index 12cd87e..b145627 100644 --- a/frontend/src/css/fonts.css +++ b/assets/css/fonts.css @@ -1,109 +1,109 @@ /* Kanit */ @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-thin.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-thin.ttf') format('truetype'); font-weight: 100; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-thin-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-thin-italic.ttf') format('truetype'); font-weight: 100; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-extralight.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-extralight.ttf') format('truetype'); font-weight: 200; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-extralight-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-extralight-italic.ttf') format('truetype'); font-weight: 200; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-light.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-light.ttf') format('truetype'); font-weight: 300; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-light-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-light-italic.ttf') format('truetype'); font-weight: 300; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-regular.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-regular.ttf') format('truetype'); font-weight: 400; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-regular-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-regular-italic.ttf') format('truetype'); font-weight: 400; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-medium.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-medium.ttf') format('truetype'); font-weight: 500; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-medium-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-medium-italic.ttf') format('truetype'); font-weight: 500; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-semibold.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-semibold.ttf') format('truetype'); font-weight: 600; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-semibold-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-semibold-italic.ttf') format('truetype'); font-weight: 600; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-bold.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-bold.ttf') format('truetype'); font-weight: 700; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-bold-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-bold-italic.ttf') format('truetype'); font-weight: 700; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-extrabold.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-extrabold.ttf') format('truetype'); font-weight: 800; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-extrabold-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-extrabold-italic.ttf') format('truetype'); font-weight: 800; font-style: italic; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-black.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-black.ttf') format('truetype'); font-weight: 900; font-style: normal; } @font-face { font-family: 'Kanit'; - src: url('/frontend/assets/fonts/kanit/kanit-black-italic.ttf') format('truetype'); + src: url('/assets/fonts/kanit/kanit-black-italic.ttf') format('truetype'); font-weight: 900; font-style: italic; } @@ -112,109 +112,109 @@ /* Montserrat */ @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-thin.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-thin.ttf') format('truetype'); font-weight: 100; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-thin-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-thin-italic.ttf') format('truetype'); font-weight: 100; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-extralight.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-extralight.ttf') format('truetype'); font-weight: 200; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-extralight-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-extralight-italic.ttf') format('truetype'); font-weight: 200; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-light.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-light.ttf') format('truetype'); font-weight: 300; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-light-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-light-italic.ttf') format('truetype'); font-weight: 300; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-regular.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-regular.ttf') format('truetype'); font-weight: 400; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-regular-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-regular-italic.ttf') format('truetype'); font-weight: 400; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-medium.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-medium.ttf') format('truetype'); font-weight: 500; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-medium-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-medium-italic.ttf') format('truetype'); font-weight: 500; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-semibold.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-semibold.ttf') format('truetype'); font-weight: 600; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-semibold-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-semibold-italic.ttf') format('truetype'); font-weight: 600; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-bold.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-bold.ttf') format('truetype'); font-weight: 700; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-bold-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-bold-italic.ttf') format('truetype'); font-weight: 700; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-extrabold.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-extrabold.ttf') format('truetype'); font-weight: 800; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-extrabold-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-extrabold-italic.ttf') format('truetype'); font-weight: 800; font-style: italic; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-black.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-black.ttf') format('truetype'); font-weight: 900; font-style: normal; } @font-face { font-family: 'Montserrat'; - src: url('/frontend/assets/fonts/montserrat/montserrat-black-italic.ttf') format('truetype'); + src: url('/assets/fonts/montserrat/montserrat-black-italic.ttf') format('truetype'); font-weight: 900; font-style: italic; } @@ -223,97 +223,97 @@ /* SourceCodePro */ @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-extralight.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-extralight.ttf') format('truetype'); font-weight: 200; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-extralight-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-extralight-italic.ttf') format('truetype'); font-weight: 200; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-light.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-light.ttf') format('truetype'); font-weight: 300; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-light-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-light-italic.ttf') format('truetype'); font-weight: 300; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-regular.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-regular.ttf') format('truetype'); font-weight: 400; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-regular-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-regular-italic.ttf') format('truetype'); font-weight: 400; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-medium.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-medium.ttf') format('truetype'); font-weight: 500; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-medium-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-medium-italic.ttf') format('truetype'); font-weight: 500; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-semibold.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-semibold.ttf') format('truetype'); font-weight: 600; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-semibold-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-semibold-italic.ttf') format('truetype'); font-weight: 600; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-bold.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-bold.ttf') format('truetype'); font-weight: 700; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-bold-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-bold-italic.ttf') format('truetype'); font-weight: 700; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-extrabold.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-extrabold.ttf') format('truetype'); font-weight: 800; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-extrabold-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-extrabold-italic.ttf') format('truetype'); font-weight: 800; font-style: italic; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-black.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-black.ttf') format('truetype'); font-weight: 900; font-style: normal; } @font-face { font-family: 'SourceCodePro'; - src: url('/frontend/assets/fonts/sourcecodepro/sourcecodepro-black-italic.ttf') format('truetype'); + src: url('/assets/fonts/sourcecodepro/sourcecodepro-black-italic.ttf') format('truetype'); font-weight: 900; font-style: italic; } @@ -322,58 +322,88 @@ /* Lora */ @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-regular.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-regular.ttf') format('truetype'); font-weight: 400; font-style: normal; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-regular-italic.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-regular-italic.ttf') format('truetype'); font-weight: 400; font-style: italic; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-medium.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-medium.ttf') format('truetype'); font-weight: 500; font-style: normal; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-medium-italic.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-medium-italic.ttf') format('truetype'); font-weight: 500; font-style: italic; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-semibold.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-semibold.ttf') format('truetype'); font-weight: 600; font-style: normal; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-semibold-italic.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-semibold-italic.ttf') format('truetype'); font-weight: 600; font-style: italic; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-bold.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-bold.ttf') format('truetype'); font-weight: 700; font-style: normal; } @font-face { font-family: 'Lora'; - src: url('/frontend/assets/fonts/lora/lora-bold-italic.ttf') format('truetype'); + src: url('/assets/fonts/lora/lora-bold-italic.ttf') format('truetype'); font-weight: 700; font-style: italic; } -/* NotoColorEmoji */ +/* PlayfairDisplaySC */ @font-face { - font-family: 'NotoColorEmoji'; - src: url('/frontend/assets/fonts/notocoloremoji/notocoloremoji-regular.ttf') format('truetype'); + font-family: 'PlayfairDisplaySC'; + src: url('/assets/fonts/playfairdisplaysc/playfairdisplaysc-regular.ttf') format('truetype'); font-weight: 400; font-style: normal; } +@font-face { + font-family: 'PlayfairDisplaySC'; + src: url('/assets/fonts/playfairdisplaysc/playfairdisplaysc-regular-italic.ttf') format('truetype'); + font-weight: 400; + font-style: italic; +} +@font-face { + font-family: 'PlayfairDisplaySC'; + src: url('/assets/fonts/playfairdisplaysc/playfairdisplaysc-bold.ttf') format('truetype'); + font-weight: 700; + font-style: normal; +} +@font-face { + font-family: 'PlayfairDisplaySC'; + src: url('/assets/fonts/playfairdisplaysc/playfairdisplaysc-bold-italic.ttf') format('truetype'); + font-weight: 700; + font-style: italic; +} +@font-face { + font-family: 'PlayfairDisplaySC'; + src: url('/assets/fonts/playfairdisplaysc/playfairdisplaysc-black.ttf') format('truetype'); + font-weight: 900; + font-style: normal; +} +@font-face { + font-family: 'PlayfairDisplaySC'; + src: url('/assets/fonts/playfairdisplaysc/playfairdisplaysc-black-italic.ttf') format('truetype'); + font-weight: 900; + font-style: italic; +} diff --git a/assets/css/styles.css b/assets/css/styles.css new file mode 100644 index 0000000..4a58eeb --- /dev/null +++ b/assets/css/styles.css @@ -0,0 +1,363 @@ +@import "./fonts.css"; +@import 'tailwindcss/base'; +@import 'tailwindcss/components'; +@import 'tailwindcss/utilities'; + +h1, h2, h3, h4, h5, h6 { + font-family: Kanit; + font-weight: 600; + font-style: normal; + text-align: center; + line-height: 1; +} + +h1 { + font-size: 3rem; + @apply text-primary-200; +} + +h1.title { + @apply font-title font-bold; + @apply underline text-primary-200/90; +} + +h2 { + font-size: 2.6rem; +} + +h3 { + font-size: 2.2rem; +} + +h4 { + font-size: 1.8rem; +} + +h5 { + font-size: 1.4rem; +} + +h6 { + font-size: 1rem; +} + +p { + @apply text-center sm:text-start; +} + +input { + @apply rounded rounded-md drop-shadow-sm px-2 py-1; + @apply bg-secondary/25; + @apply w-full; +} + +input[type="submit"] { + @apply rounded rounded-lg drop-shadow-md px-4 py-2; + @apply bg-secondary hover:bg-secondary-600; + @apply cursor-pointer; + @apply font-semibold; + @apply hover:drop-shadow-xl; +} + +select { + @apply rounded rounded-md drop-shadow-sm px-2 py-1; + @apply bg-secondary/25; + @apply w-full; +} + +select.error { + @apply border-2 border-failure/50; +} + +input.error { + @apply border-2 border-failure/50; +} + +fieldset { + @apply border border-secondary p-4; +} +legend { + @apply text-sm text-secondary px-2; +} +label { + @apply text-sm text-secondary/75 font-semibold; +} + +a:not(.btn, .btn-outline) { + @apply underline text-secondary-300; +} +div.call-to-action-box a { + @apply text-secondary-200; +} + +ul, ol { + list-style-position: outside; +} +ul { + list-style-type: disc; +} +ol { + list-style-type: decimal; +} +li { + @apply text-start; +} + +code { + @apply bg-neutral-800/75 rounded-md; + @apply px-1 py-0.5; + @apply text-neutral-200 font-mono; +} + +.btn { + text-align: center; + @apply rounded rounded-lg drop-shadow-md px-2 py-1; + @apply bg-accent hover:bg-accent-600; + @apply font-semibold text-primary-100 hover:text-primary-200; + @apply hover:drop-shadow-xl; + @apply border-2 border-accent hover:border-accent-700; + @apply transition-all; +} + +.btn-outline { + text-align: center; + @apply rounded rounded-lg drop-shadow-md px-2 py-1; + @apply bg-transparent hover:bg-accent-600; + @apply font-semibold text-accent hover:text-primary-100; + @apply hover:drop-shadow-xl; + @apply border-2 border-accent hover:border-accent-700; + @apply transition-all; +} + +body.global { + min-height: 100vh; + width: 100%; + display: flex; + flex-direction: column; + @apply bg-gradient-to-b from-primary-900/75 via-background to-primary-900/75; +} + +header.global, main.global, footer.global { + width: 100%; +} + +main.global { + display: flex; + flex-direction: column; + flex-grow: 1; + justify-content: center; + align-items: center; +} + +div.status-message { + display: flex; + width: 100%; + justify-content: center; + align-items: center; + border-radius: 0.5rem; + padding: 0.5rem; +} + +div.status-message.error { + @apply italic text-failure-300 bg-failure/50 border border-failure; +} + +div.call-to-action-box { + @apply bg-gradient-to-r from-secondary-300/75 to-secondary-500/75; + @apply rounded-md py-4 px-6; + @apply text-center sm:text-start; +} + +.loader { + overflow: hidden; +} +.loader.loader-bar { + @apply h-1 bg-accent rounded rounded-full; +} +.loader.loader-value { + @apply font-bold text-end; +} + +.loader--loading { + animation: loading 2s infinite linear; +} +.loader--finished { + animation: finished 1.5s ease-in both; +} +.loader--value { + animation: loaded 1s ease-out both; +} + +@keyframes loading { + 0% { + transform: scaleX(0%) translateX(-100%); + transform-origin: left; + } + + 50% { + transform: scaleX(50%); + transform-origin: center; + } + + 100% { + transform: scaleX(0%) translateX(100%); + transform-origin: right; + } +} + +@keyframes finished { + 0% { + transform: scaleX(0%); + transform-origin: center; + } + + 50% { + transform: scaleX(100%); + transform-origin: center; + opacity: 1; + } + + 100% { + transform: scaleX(100%) translateX(1000%); + transform-origin: right; + opacity: 0; + } +} + +@keyframes loaded { + 0% { + transform: translateX(1000%); + opacity: 0; + } + + 100% { + transform: translateX(0%); + opacity: 1; + } +} + +#logo-wings { + animation: logowings 2s ease-in-out infinite alternate; +} +#logo-wings--subtle { + animation: logowings-subtle 2s ease-in-out infinite alternate; +} +#logo-heart { + animation: logoheart 1s linear infinite; + transform-origin: center; +} +#logo-heart--subtle { + animation: logoheart-subtle 1s linear infinite; + transform-origin: center; +} +#logo-blips { + animation: logoblips 6s linear infinite; + transform-origin: bottom; + transform-box: fill-box; +} +#logo-blips--subtle { + animation: logoblips-subtle 6s linear infinite; + transform-origin: bottom; + transform-box: fill-box; +} + +@keyframes logowings { + 0% { + transform: translateY(0%); + } + + 100% { + transform: translateY(5%); + } +} +@keyframes logowings-subtle { + 0% { + transform: translateY(5%); + } + + 100% { + transform: translateY(8%); + } +} + +@keyframes logoheart { + 0%, 25%, 50%, 100% { + transform: scale(100%); + } + + 12%, 37% { + transform: scale(105%); + } +} +@keyframes logoheart-subtle { + 0%, 25%, 50%, 100% { + transform: scale(100%); + } + + 12%, 37% { + transform: scale(102%); + } +} + +@keyframes logoblips { + 0% { + transform: rotateY(0deg) + } + + 5%, 100% { + transform: rotateY(360deg); + } +} +@keyframes logoblips-subtle { + 0% { + transform: rotateY(0deg) + } + + 5%, 100% { + transform: rotateY(360deg); + } +} + +path.hamburger-path { + @apply fill-secondary stroke-secondary; +} + +#hamburger-content.hamburger--closed { + @apply hidden sm:flex; +} +#hamburger-content.hamburger--open { + @apply flex; +} +#hamburger-svg.hamburger--open { + transform-origin: center; + transform: rotate(90deg); +} +#hamburger-svg.hamburger--closed { + transform-origin: center; + transform: rotate(0deg); +} + +.help-div--changing p.fadeout { + animation: 1s fadeout ease-in-out both; +} +.help-div--changing p.fadein, a.fadein { + animation: 1s fadein ease-in-out 1s both; +} +@keyframes fadeout { + 0% { + opacity: 1; + } + + 100% { + opacity: 0; + } +} +@keyframes fadein { + 0% { + opacity: 0; + } + + 100% { + opacity: 1; + } +} diff --git a/frontend/assets/fonts/kanit/kanit-black-italic.ttf b/assets/fonts/kanit/kanit-black-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-black-italic.ttf rename to assets/fonts/kanit/kanit-black-italic.ttf diff --git a/frontend/assets/fonts/kanit/kanit-black.ttf b/assets/fonts/kanit/kanit-black.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-black.ttf rename to assets/fonts/kanit/kanit-black.ttf diff --git a/frontend/assets/fonts/kanit/kanit-bold-italic.ttf b/assets/fonts/kanit/kanit-bold-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-bold-italic.ttf rename to assets/fonts/kanit/kanit-bold-italic.ttf diff --git a/frontend/assets/fonts/kanit/kanit-bold.ttf b/assets/fonts/kanit/kanit-bold.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-bold.ttf rename to assets/fonts/kanit/kanit-bold.ttf diff --git a/frontend/assets/fonts/kanit/kanit-extrabold-italic.ttf b/assets/fonts/kanit/kanit-extrabold-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-extrabold-italic.ttf rename to assets/fonts/kanit/kanit-extrabold-italic.ttf diff --git a/frontend/assets/fonts/kanit/kanit-extrabold.ttf b/assets/fonts/kanit/kanit-extrabold.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-extrabold.ttf rename to assets/fonts/kanit/kanit-extrabold.ttf diff --git a/frontend/assets/fonts/kanit/kanit-extralight-italic.ttf b/assets/fonts/kanit/kanit-extralight-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-extralight-italic.ttf rename to assets/fonts/kanit/kanit-extralight-italic.ttf diff --git a/frontend/assets/fonts/kanit/kanit-extralight.ttf b/assets/fonts/kanit/kanit-extralight.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-extralight.ttf rename to assets/fonts/kanit/kanit-extralight.ttf diff --git a/frontend/assets/fonts/kanit/kanit-light-italic.ttf b/assets/fonts/kanit/kanit-light-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-light-italic.ttf rename to assets/fonts/kanit/kanit-light-italic.ttf diff --git a/frontend/assets/fonts/kanit/kanit-light.ttf b/assets/fonts/kanit/kanit-light.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-light.ttf rename to assets/fonts/kanit/kanit-light.ttf diff --git a/frontend/assets/fonts/kanit/kanit-medium-italic.ttf b/assets/fonts/kanit/kanit-medium-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-medium-italic.ttf rename to assets/fonts/kanit/kanit-medium-italic.ttf diff --git a/frontend/assets/fonts/kanit/kanit-medium.ttf b/assets/fonts/kanit/kanit-medium.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-medium.ttf rename to assets/fonts/kanit/kanit-medium.ttf diff --git a/frontend/assets/fonts/kanit/kanit-regular-italic.ttf b/assets/fonts/kanit/kanit-regular-italic.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-regular-italic.ttf rename to 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--git a/frontend/assets/fonts/kanit/kanit-thin.ttf b/assets/fonts/kanit/kanit-thin.ttf similarity index 100% rename from frontend/assets/fonts/kanit/kanit-thin.ttf rename to assets/fonts/kanit/kanit-thin.ttf diff --git a/frontend/assets/fonts/lora/lora-bold-italic.ttf b/assets/fonts/lora/lora-bold-italic.ttf similarity index 100% rename from frontend/assets/fonts/lora/lora-bold-italic.ttf rename to assets/fonts/lora/lora-bold-italic.ttf diff --git a/frontend/assets/fonts/lora/lora-bold.ttf b/assets/fonts/lora/lora-bold.ttf similarity index 100% rename from frontend/assets/fonts/lora/lora-bold.ttf rename to assets/fonts/lora/lora-bold.ttf diff --git a/frontend/assets/fonts/lora/lora-medium-italic.ttf b/assets/fonts/lora/lora-medium-italic.ttf similarity index 100% rename from frontend/assets/fonts/lora/lora-medium-italic.ttf rename to assets/fonts/lora/lora-medium-italic.ttf diff --git a/frontend/assets/fonts/lora/lora-medium.ttf b/assets/fonts/lora/lora-medium.ttf similarity index 100% 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--git a/assets/ts/index.ts b/assets/ts/index.ts new file mode 100644 index 0000000..b833fd8 --- /dev/null +++ b/assets/ts/index.ts @@ -0,0 +1,10 @@ + +const navbarToggleButton = document.querySelector('#navbarToggleButton'); + +//button.addEventListener('click', () => { + //if (button.textContent === 'Click me') { + //button.textContent = 'Clicked'; + //} else { + //button.textContent = 'Click me'; + //} +//}); diff --git a/backend/config.py b/backend/config.py deleted file mode 100644 index 9ef0e3f..0000000 --- a/backend/config.py +++ /dev/null @@ -1,45 +0,0 @@ -"""This module provides global application settings. - -All settings are read from environment variables, but defaults are provided below -if the respective envvar is unset. -""" - -import os -from urllib.parse import quote_plus as url_encode -from functools import lru_cache - -from pydantic import BaseSettings, PostgresDsn - - -class Settings(BaseSettings): - """Contains application-specific configuration values. - - Reads the values from environment variables and falls back to default values - if the corresponding environment variable is unset. - """ - - app_name: str = os.getenv("APP_NAME", "MEDWingS") - app_version: str = os.getenv("APP_VERSION", "Unspecified") - - contact_name: str = os.getenv("CONTACT_NAME", "MEDWingS Development Team") - contact_email: str = os.getenv("CONTACT_EMAIL", "admin@example.com") - contact_url: str = os.getenv("CONTACT_URL", "https://www.example.com") - - # Debug mode has the following effects: - # - logs SQL operations - debug_mode: bool = False - if os.getenv("DEBUG_MODE", "false").lower() == "true": - debug_mode = True - - pg_hostname = os.getenv("POSTGRES_HOST", "db") - pg_port = os.getenv("POSTGRES_PORT", "5432") - pg_dbname = os.getenv("POSTGRES_DB", "medwings") - pg_user = url_encode(os.getenv("POSTGRES_USER", "medwings")) - pg_password = url_encode(os.getenv("POSTGRES_PASSWORD", "medwings")) - - -@lru_cache -def get_settings() -> Settings: - """Creates the settings once and returns a cached version on subsequent requests.""" - - return Settings() diff --git a/backend/crud/devices.py b/backend/crud/devices.py deleted file mode 100644 index a44160d..0000000 --- a/backend/crud/devices.py +++ /dev/null @@ -1,68 +0,0 @@ -"""This module handles CRUD operations for users in the database, based on pydanctic schemas.""" - -from datetime import datetime - -from sqlalchemy.orm import Session - -from backend.models import devices as devicemodel -from backend.models import users as usermodel -from backend.schemas import devices as deviceschema -from backend.exceptions import DataIntegrityException, NotFoundException - - -def create_device(db: Session, device: deviceschema.DeviceCreate) -> deviceschema.Device: - """Creates the specified device in the database.""" - - db_user = db.query(usermodel.User).filter(usermodel.User.id == device.owner_id).first() - if not db_user: - raise NotFoundException("Attempted to create a device for a nonexistent user.") - if not db_user.patient: - raise DataIntegrityException("Attempted to create a device for a user who is not a patient.") - - db_device = devicemodel.Device( - model_id=device.model_id, - owner_id=device.owner_id, - ) - db.add(db_device) - db.commit() - db.refresh(db_device) - - return deviceschema.Device.from_orm(db_device) - - -def read_device(db: Session, id: int) -> deviceschema.Device | None: - """Queries the db for a device with the specified id and returns it.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == id).first() - if not db_device: - raise NotFoundException(f"Device with id '{id}' was not found.") - - return deviceschema.Device.from_orm(db_device) - - -def update_device(db: Session, device: deviceschema.DeviceUpdate, id: int) -> deviceschema.Device: - """Updates the specified device's last seen time.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == id).first() - if not db_device: - raise NotFoundException(f"Device with id '{id}' was not found.") - - db_device.last_seen = device.last_seen - db.commit() - db.refresh(db_device) - - return deviceschema.Device.from_orm(db_device) - - -def delete_device(db: Session, id: int) -> deviceschema.Device: - """Deletes the user with the provided id from the db.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == id).first() - if not db_device: - raise NotFoundException(f"Device with id '{id}' was not found.") - device_copy = deviceschema.Device.from_orm(db_device) - - db.delete(db_device) - db.commit() - - return device_copy diff --git a/backend/crud/records.py b/backend/crud/records.py deleted file mode 100644 index 81c9281..0000000 --- a/backend/crud/records.py +++ /dev/null @@ -1,329 +0,0 @@ -"""This module handles CRUD operations for vitals records in the database, based on pydanctic schemas.""" - -from datetime import datetime - -from sqlalchemy.orm import Session - -from backend.models import records as recordmodel -from backend.models import devices as devicemodel -from backend.schemas import records as recordschema -from backend.exceptions import NotFoundException - - -def create_heart_rate_record(db: Session, record: recordschema.HeartRateRecordCreate, device_id: int) -> recordschema.HeartRateRecord: - """Creates the specified heart rate record in the database.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - db_record = recordmodel.HeartRateRecord( - value=record.value, - measured=record.measured, - device_id=device_id, - ) - db.add(db_record) - db.commit() - db.refresh(db_record) - - return recordschema.HeartRateRecord.from_orm(db_record) - - -def read_heart_rate_records_by_device( - db: Session, device_id: int, - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ) -> list[recordschema.HeartRateRecord]: - """Queries the db for a range of heart rate records captured by the device with the specified id.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - filters = [recordmodel.HeartRateRecord.device == db_device] - if since: - filters.append(recordmodel.HeartRateRecord.measured >= since) - if until: - filters.append(recordmodel.HeartRateRecord.measured <= until) - - return db.query(recordmodel.HeartRateRecord).filter(*filters).order_by(recordmodel.HeartRateRecord.measured.desc()).offset(skip).limit(limit).all() - - -def delete_heart_rate_record(db: Session, record_id: int) -> recordschema.HeartRateRecord: - """Deletes the heart rate record with the provided id from the db.""" - - db_record = db.query(recordmodel.HeartRateRecord).filter(recordmodel.HeartRateRecord.id == record_id).first() - if not db_record: - raise NotFoundException(f"Record with id '{record_id}' does not exist.") - record_copy = recordschema.HeartRateRecord.from_orm(db_record) - - db.delete(db_record) - db.commit() - - return record_copy - - -def create_avpu_score_record(db: Session, record: recordschema.AvpuScoreRecordCreate, device_id: int) -> recordschema.AvpuScoreRecord: - """Creates the specified AVPU score record in the database.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - db_record = recordmodel.AvpuScoreRecord( - value=record.value, - measured=record.measured, - device_id=device_id, - ) - db.add(db_record) - db.commit() - db.refresh(db_record) - - return recordschema.AvpuScoreRecord.from_orm(db_record) - - -def read_avpu_score_records_by_device( - db: Session, device_id: int, - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ) -> list[recordschema.AvpuScoreRecord]: - """Queries the db for a range of avpu score records captured by the device with the specified id.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - filters = [recordmodel.AvpuScoreRecord.device == db_device] - if since: - filters.append(recordmodel.AvpuScoreRecord.measured >= since) - if until: - filters.append(recordmodel.AvpuScoreRecord.measured <= until) - - return db.query(recordmodel.AvpuScoreRecord).filter(*filters).order_by(recordmodel.AvpuScoreRecord.measured.desc()).offset(skip).limit(limit).all() - - -def delete_avpu_score_record(db: Session, record_id: int) -> recordschema.AvpuScoreRecord: - """Deletes the avpu score record with the provided id from the db.""" - - db_record = db.query(recordmodel.AvpuScoreRecord).filter(recordmodel.AvpuScoreRecord.id == record_id).first() - if not db_record: - raise NotFoundException(f"Record with id '{record_id}' does not exist.") - record_copy = recordschema.AvpuScoreRecord.from_orm(db_record) - - db.delete(db_record) - db.commit() - - return record_copy - - -def create_body_temperature_record(db: Session, record: recordschema.BodyTemperatureRecordCreate, device_id: int) -> recordschema.BodyTemperatureRecord: - """Creates the specified body temperature record in the database.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - db_record = recordmodel.BodyTemperatureRecord( - value=record.value, - measured=record.measured, - device_id=device_id, - ) - db.add(db_record) - db.commit() - db.refresh(db_record) - - return recordschema.BodyTemperatureRecord.from_orm(db_record) - - -def read_body_temperature_records_by_device( - db: Session, device_id: int, - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ) -> list[recordschema.BodyTemperatureRecord]: - """Queries the db for a range of body temperature records captured by the device with the specified id.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - filters = [recordmodel.BodyTemperatureRecord.device == db_device] - if since: - filters.append(recordmodel.BodyTemperatureRecord.measured >= since) - if until: - filters.append(recordmodel.BodyTemperatureRecord.measured <= until) - - return db.query(recordmodel.BodyTemperatureRecord).filter(*filters).order_by(recordmodel.BodyTemperatureRecord.measured.desc()).offset(skip).limit(limit).all() - - -def delete_body_temperature_record(db: Session, record_id: int) -> recordschema.BodyTemperatureRecord: - """Deletes the body temperature record with the provided id from the db.""" - - db_record = db.query(recordmodel.BodyTemperatureRecord).filter(recordmodel.BodyTemperatureRecord.id == record_id).first() - if not db_record: - raise NotFoundException(f"Record with id '{record_id}' does not exist.") - record_copy = recordschema.BodyTemperatureRecord.from_orm(db_record) - - db.delete(db_record) - db.commit() - - return record_copy - - -def create_blood_pressure_record(db: Session, record: recordschema.BloodPressureRecordCreate, device_id: int) -> recordschema.BloodPressureRecord: - """Creates the specified blood pressure record in the database.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - db_record = recordmodel.BloodPressureRecord( - value_systolic=record.value_systolic, - value_diastolic=record.value_diastolic, - measured=record.measured, - device_id=device_id, - ) - db.add(db_record) - db.commit() - db.refresh(db_record) - - return recordschema.BloodPressureRecord.from_orm(db_record) - - -def read_blood_pressure_records_by_device( - db: Session, device_id: int, - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ) -> list[recordschema.BloodPressureRecord]: - """Queries the db for a range of blood pressure records captured by the device with the specified id.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - filters = [recordmodel.BloodPressureRecord.device == db_device] - if since: - filters.append(recordmodel.BloodPressureRecord.measured >= since) - if until: - filters.append(recordmodel.BloodPressureRecord.measured <= until) - - return db.query(recordmodel.BloodPressureRecord).filter(*filters).order_by(recordmodel.BloodPressureRecord.measured.desc()).offset(skip).limit(limit).all() - - -def delete_blood_pressure_record(db: Session, record_id: int) -> recordschema.BloodPressureRecord: - """Deletes the blood pressure record with the provided id from the db.""" - - db_record = db.query(recordmodel.BloodPressureRecord).filter(recordmodel.BloodPressureRecord.id == record_id).first() - if not db_record: - raise NotFoundException(f"Record with id '{record_id}' does not exist.") - record_copy = recordschema.BloodPressureRecord.from_orm(db_record) - - db.delete(db_record) - db.commit() - - return record_copy - - -def create_blood_oxygen_record(db: Session, record: recordschema.BloodOxygenRecordCreate, device_id: int) -> recordschema.BloodOxygenRecord: - """Creates the specified blood oxygen record in the database.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - db_record = recordmodel.BloodOxygenRecord( - value=record.value, - measured=record.measured, - device_id=device_id, - ) - db.add(db_record) - db.commit() - db.refresh(db_record) - - return recordschema.BloodOxygenRecord.from_orm(db_record) - - -def read_blood_oxygen_records_by_device( - db: Session, device_id: int, - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ) -> list[recordschema.BloodOxygenRecord]: - """Queries the db for a range of blood oxygen records captured by the device with the specified id.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - filters = [recordmodel.BloodOxygenRecord.device == db_device] - if since: - filters.append(recordmodel.BloodOxygenRecord.measured >= since) - if until: - filters.append(recordmodel.BloodOxygenRecord.measured <= until) - - return db.query(recordmodel.BloodOxygenRecord).filter(*filters).order_by(recordmodel.BloodOxygenRecord.measured.desc()).offset(skip).limit(limit).all() - - -def delete_blood_oxygen_record(db: Session, record_id: int) -> recordschema.BloodOxygenRecord: - """Deletes the blood oxygen record with the provided id from the db.""" - - db_record = db.query(recordmodel.BloodOxygenRecord).filter(recordmodel.BloodOxygenRecord.id == record_id).first() - if not db_record: - raise NotFoundException(f"Record with id '{record_id}' does not exist.") - record_copy = recordschema.BloodOxygenRecord.from_orm(db_record) - - db.delete(db_record) - db.commit() - - return record_copy - - -def create_respiration_score_record(db: Session, record: recordschema.RespirationScoreRecordCreate, device_id: int) -> recordschema.RespirationScoreRecord: - """Creates the specified respiration score record in the database.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - db_record = recordmodel.RespirationScoreRecord( - value=record.value, - measured=record.measured, - device_id=device_id, - ) - db.add(db_record) - db.commit() - db.refresh(db_record) - - return recordschema.RespirationScoreRecord.from_orm(db_record) - - -def read_respiration_score_records_by_device( - db: Session, device_id: int, - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ) -> list[recordschema.RespirationScoreRecord]: - """Queries the db for a range of respiration score records captured by the device with the specified id.""" - - db_device = db.query(devicemodel.Device).filter(devicemodel.Device.id == device_id).first() - if not db_device: - raise NotFoundException(f"Device with id '{device_id}' does not exist.") - - filters = [recordmodel.RespirationScoreRecord.device == db_device] - if since: - filters.append(recordmodel.RespirationScoreRecord.measured >= since) - if until: - filters.append(recordmodel.RespirationScoreRecord.measured <= until) - - return db.query(recordmodel.RespirationScoreRecord).filter(*filters).order_by(recordmodel.RespirationScoreRecord.measured.desc()).offset(skip).limit(limit).all() - - -def delete_respiration_score_record(db: Session, record_id: int) -> recordschema.RespirationScoreRecord: - """Deletes the respiration score record with the provided id from the db.""" - - db_record = db.query(recordmodel.RespirationScoreRecord).filter(recordmodel.RespirationScoreRecord.id == record_id).first() - if not db_record: - raise NotFoundException(f"Record with id '{record_id}' does not exist.") - record_copy = recordschema.RespirationScoreRecord.from_orm(db_record) - - db.delete(db_record) - db.commit() - - return record_copy diff --git a/backend/crud/users.py b/backend/crud/users.py deleted file mode 100644 index ce3806f..0000000 --- a/backend/crud/users.py +++ /dev/null @@ -1,144 +0,0 @@ -"""This module handles CRUD operations for users in the database, based on pydanctic schemas.""" - -from datetime import datetime - -from sqlalchemy.orm import Session - -from backend.models import users as usermodel -from backend.schemas import users as userschema -from backend.exceptions import NotFoundException - - -def hash_password(password: str) -> str: - """This is a placeholder for a secure password hashing algorithm. - - It will convert a plaintext password into a secure, salted hash, for storage - in the database. - """ - - # TODO actually hash the password! - return password - - -def _fill_missing_user_fields(db_user: usermodel.User) -> userschema.User: - """Fills all the fields of an instance of userschema.User that cannot be filled by pydantic. - - This function is necessary because the userschema is not a one-to-one reflection - of the database data model. I did not want the 'patient' and 'administrator' - database table to be encoded as their own top level JSON keys in serialized - user object. Instead, the user schema combines all fields from all user types. - This function fills the optional fields, depending on what type of user is - passed in. - """ - - - full_user = userschema.User.from_orm(db_user) - if db_user.patient: - full_user.devices = db_user.patient.devices - full_user.gender = db_user.patient.gender - full_user.date_of_birth = db_user.patient.date_of_birth - full_user.is_patient = True - full_user.is_admin = False - else: - full_user.is_patient = False - full_user.is_admin = True - - return full_user - - -def create_user(db: Session, user: userschema.UserCreate) -> userschema.User: - """Creates the specified user in the database.""" - - db_user = usermodel.User( - email=user.email, - first_name=user.first_name, - last_name=user.last_name, - password=hash_password(user.password), - ) - - if user.is_patient: - db_patient = usermodel.Patient( - user=db_user, - gender=user.gender, - date_of_birth=user.date_of_birth, - ) - db.add(db_patient) - else: - db_administrator = usermodel.Administrator( - user=db_user, - ) - db.add(db_administrator) - - db.commit() - - db.refresh(db_user) - return _fill_missing_user_fields(db_user) - - -def read_user(db: Session, id: int) -> userschema.User | None: - """Queries the db for a user with the specified id and returns them.""" - - db_user = db.query(usermodel.User).filter(usermodel.User.id == id).first() - if not db_user: - raise NotFoundException(f"User with id '{id}' not found.") - - return _fill_missing_user_fields(db_user) - - -def read_user_by_email(db: Session, email: str) -> userschema.User | None: - """Queries the db for a user with the specified email and returns them.""" - - db_user = db.query(usermodel.User).filter(usermodel.User.email == email).first() - if not db_user: - raise NotFoundException(f"User with email '{email}' not found.") - - return _fill_missing_user_fields(db_user) - - -def read_users(db: Session, skip: int = 0, limit: int = 0) -> list[userschema.User]: - """Returns an unfiltered range (by id) of users in the database.""" - - db_users = db.query(usermodel.User).offset(skip).limit(limit).all() - - full_users = [] - for db_user in db_users: - full_users.append(_fill_missing_user_fields(db_user)) - return full_users - - -def update_user(db: Session, user: userschema.UserUpdate, id: int) -> userschema.User: - """Updates the user with the provided id with all non-None fields from the input user.""" - - db_user = db.query(usermodel.User).filter(usermodel.User.id == id).first() - if not db_user: - raise NotFoundException(f"User with id '{id}' not found.") - - for key in ['gender', 'date_of_birth']: - value = getattr(user, key) - if value is not None: - setattr(db_user.patient, key, value) - for key in ['email', 'first_name', 'last_name']: - value = getattr(user, key) - if value is not None: - setattr(db_user, key, value) - if user.password is not None: - db_user.password = hash_password(user.password) - - db.commit() - db.refresh(db_user) - return _fill_missing_user_fields(db_user) - - -def delete_user(db: Session, id: int) -> userschema.User: - """Deletes the user with the provided id from the db.""" - - db_user = db.query(usermodel.User).filter(usermodel.User.id == id).first() - if not db_user: - raise NotFoundException(f"User with id '{id}' not found.") - user_copy = _fill_missing_user_fields(db_user) - - db.delete(db_user) - db.commit() - - user_copy.updated = datetime.now(user_copy.updated.tzinfo) - return user_copy diff --git a/backend/database/alembic.ini b/backend/database/alembic.ini deleted file mode 100644 index 778a46d..0000000 --- a/backend/database/alembic.ini +++ /dev/null @@ -1,110 +0,0 @@ -# A generic, single database configuration. - -[alembic] -# path to migration scripts -script_location = migrations - -# template used to generate migration file names; The default value is %%(rev)s_%%(slug)s -# Uncomment the line below if you want the files to be prepended with date and time -# see https://alembic.sqlalchemy.org/en/latest/tutorial.html#editing-the-ini-file -# for all available tokens -# file_template = %%(year)d_%%(month).2d_%%(day).2d_%%(hour).2d%%(minute).2d-%%(rev)s_%%(slug)s - -# sys.path path, will be prepended to sys.path if present. -# defaults to the current working directory. -prepend_sys_path = ../.. - -# timezone to use when rendering the date within the migration file -# as well as the filename. -# If specified, requires the python-dateutil library that can be -# installed by adding `alembic[tz]` to the pip requirements -# string value is passed to dateutil.tz.gettz() -# leave blank for localtime -# timezone = - -# max length of characters to apply to the -# "slug" field -# truncate_slug_length = 40 - -# set to 'true' to run the environment during -# the 'revision' command, regardless of autogenerate -# revision_environment = false - -# set to 'true' to allow .pyc and .pyo files without -# a source .py file to be detected as revisions in the -# versions/ directory -# sourceless = false - -# version location specification; This defaults -# to migrations/versions. When using multiple version -# directories, initial revisions must be specified with --version-path. -# The path separator used here should be the separator specified by "version_path_separator" below. -# version_locations = %(here)s/bar:%(here)s/bat:migrations/versions - -# version path separator; As mentioned above, this is the character used to split -# version_locations. The default within new alembic.ini files is "os", which uses os.pathsep. -# If this key is omitted entirely, it falls back to the legacy behavior of splitting on spaces and/or commas. -# Valid values for version_path_separator are: -# -# version_path_separator = : -# version_path_separator = ; -# version_path_separator = space -version_path_separator = os # Use os.pathsep. Default configuration used for new projects. - -# set to 'true' to search source files recursively -# in each "version_locations" directory -# new in Alembic version 1.10 -# recursive_version_locations = false - -# the output encoding used when revision files -# are written from script.py.mako -# output_encoding = utf-8 - -sqlalchemy.url = driver://user:pass@localhost/dbname - - -[post_write_hooks] -# post_write_hooks defines scripts or Python functions that are run -# on newly generated revision scripts. See the documentation for further -# detail and examples - -# format using "black" - use the console_scripts runner, against the "black" entrypoint -# hooks = black -# black.type = console_scripts -# black.entrypoint = black -# black.options = -l 79 REVISION_SCRIPT_FILENAME - -# Logging configuration -[loggers] -keys = root,sqlalchemy,alembic - -[handlers] -keys = console - -[formatters] -keys = generic - -[logger_root] -level = WARN -handlers = console -qualname = - -[logger_sqlalchemy] -level = WARN -handlers = -qualname = sqlalchemy.engine - -[logger_alembic] -level = INFO -handlers = -qualname = alembic - -[handler_console] -class = StreamHandler -args = (sys.stderr,) -level = NOTSET -formatter = generic - -[formatter_generic] -format = %(levelname)-5.5s [%(name)s] %(message)s -datefmt = %H:%M:%S diff --git a/backend/database/engine.py b/backend/database/engine.py deleted file mode 100644 index 7b1aaa4..0000000 --- a/backend/database/engine.py +++ /dev/null @@ -1,27 +0,0 @@ -"""This module configures and provides the sqlalchemy session factory and base model.""" - -from sqlalchemy import create_engine -from sqlalchemy.orm import sessionmaker -from sqlalchemy.ext.declarative import declarative_base - -from backend.config import get_settings - - -s = get_settings() - -# The SQL driver is specified by the DSN-prefix below. -_pg_dsn = f"postgresql+psycopg2://{s.pg_user}:{s.pg_password}@{s.pg_hostname}:{s.pg_port}/{s.pg_dbname}" -engine = create_engine(_pg_dsn, echo=s.debug_mode) - -# SQLalchemy session factory -SessionLocal = sessionmaker(engine) -# SQLalchemy base model -Base = declarative_base() - - -def get_db(): - db = SessionLocal() - try: - yield db - finally: - db.close() diff --git a/backend/database/migrations/env.py b/backend/database/migrations/env.py deleted file mode 100644 index fd9cb5c..0000000 --- a/backend/database/migrations/env.py +++ /dev/null @@ -1,80 +0,0 @@ -from logging.config import fileConfig - -from sqlalchemy import engine_from_config -from sqlalchemy import pool -from alembic import context - -from backend.database.engine import _pg_dsn as pg_connection_str - -# this is the Alembic Config object, which provides -# access to the values within the .ini file in use. -config = context.config -config.set_main_option('sqlalchemy.url', pg_connection_str) - -# Interpret the config file for Python logging. -# This line sets up loggers basically. -if config.config_file_name is not None: - fileConfig(config.config_file_name) - -# add your model's MetaData object here -# for 'autogenerate' support -# from myapp import mymodel -# target_metadata = mymodel.Base.metadata -target_metadata = None - -# other values from the config, defined by the needs of env.py, -# can be acquired: -# my_important_option = config.get_main_option("my_important_option") -# ... etc. - - -def run_migrations_offline() -> None: - """Run migrations in 'offline' mode. - - This configures the context with just a URL - and not an Engine, though an Engine is acceptable - here as well. By skipping the Engine creation - we don't even need a DBAPI to be available. - - Calls to context.execute() here emit the given string to the - script output. - - """ - url = config.get_main_option("sqlalchemy.url") - context.configure( - url=url, - target_metadata=target_metadata, - literal_binds=True, - dialect_opts={"paramstyle": "named"}, - ) - - with context.begin_transaction(): - context.run_migrations() - - -def run_migrations_online() -> None: - """Run migrations in 'online' mode. - - In this scenario we need to create an Engine - and associate a connection with the context. - - """ - connectable = engine_from_config( - config.get_section(config.config_ini_section, {}), - prefix="sqlalchemy.", - poolclass=pool.NullPool, - ) - - with connectable.connect() as connection: - context.configure( - connection=connection, target_metadata=target_metadata - ) - - with context.begin_transaction(): - context.run_migrations() - - -if context.is_offline_mode(): - run_migrations_offline() -else: - run_migrations_online() diff --git a/backend/database/migrations/script.py.mako b/backend/database/migrations/script.py.mako deleted file mode 100644 index 55df286..0000000 --- a/backend/database/migrations/script.py.mako +++ /dev/null @@ -1,24 +0,0 @@ -"""${message} - -Revision ID: ${up_revision} -Revises: ${down_revision | comma,n} -Create Date: ${create_date} - -""" -from alembic import op -import sqlalchemy as sa -${imports if imports else ""} - -# revision identifiers, used by Alembic. -revision = ${repr(up_revision)} -down_revision = ${repr(down_revision)} -branch_labels = ${repr(branch_labels)} -depends_on = ${repr(depends_on)} - - -def upgrade() -> None: - ${upgrades if upgrades else "pass"} - - -def downgrade() -> None: - ${downgrades if downgrades else "pass"} diff --git a/backend/database/migrations/versions/335e07a98bc8_create_user_tables.py b/backend/database/migrations/versions/335e07a98bc8_create_user_tables.py deleted file mode 100644 index 94946ea..0000000 --- a/backend/database/migrations/versions/335e07a98bc8_create_user_tables.py +++ /dev/null @@ -1,50 +0,0 @@ -"""create user tables - -Revision ID: 335e07a98bc8 -Revises: -Create Date: 2023-05-12 19:59:22.188464 - -""" -from alembic import op -from sqlalchemy import Column, ForeignKey, Integer, String, DateTime, Date, Enum -from sqlalchemy.sql.functions import now - -from backend.models.users import Gender - - -# revision identifiers, used by Alembic. -revision = '335e07a98bc8' -down_revision = None -branch_labels = None -depends_on = None - - -def upgrade() -> None: - op.create_table( - 'users', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('email', String, unique=True, nullable=False), - Column('password', String, nullable=False), - Column('created', DateTime(timezone=True), nullable=False, server_default=now()), - Column('updated', DateTime(timezone=True), nullable=False, server_default=now(), onupdate=now()), - Column('first_name', String, nullable=False), - Column('last_name', String, nullable=False), - ) - - op.create_table( - 'administrators', - Column('user_id', Integer, ForeignKey('users.id', ondelete="CASCADE"), primary_key=True,) - ) - - op.create_table( - 'patients', - Column('user_id', Integer, ForeignKey('users.id', ondelete="CASCADE"), primary_key=True), - Column('date_of_birth', Date, nullable=False), - Column('gender', Enum(Gender), nullable=False), - ) - - -def downgrade() -> None: - op.drop_table('users') - op.drop_table('administrators') - op.drop_table('patients') diff --git a/backend/database/migrations/versions/7e5a8cabd3a4_create_device_tables.py b/backend/database/migrations/versions/7e5a8cabd3a4_create_device_tables.py deleted file mode 100644 index 249a891..0000000 --- a/backend/database/migrations/versions/7e5a8cabd3a4_create_device_tables.py +++ /dev/null @@ -1,61 +0,0 @@ -"""create device tables - -Revision ID: 7e5a8cabd3a4 -Revises: 335e07a98bc8 -Create Date: 2023-05-12 21:59:26.867894 - -""" -from alembic import op -from sqlalchemy import Column, ForeignKey, Integer, String, DateTime -from sqlalchemy.sql.functions import now - - -# revision identifiers, used by Alembic. -revision = '7e5a8cabd3a4' -down_revision = '335e07a98bc8' -branch_labels = None -depends_on = down_revision - - -def upgrade() -> None: - - device_models_table = op.create_table( - 'device_models', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('name', String, unique=True, nullable=False), - Column('picture_code', String, unique=True, nullable=False), - ) - - op.create_table( - 'devices', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('added', DateTime(timezone=True), nullable=False, server_default=now()), - Column('last_seen', DateTime(timezone=True), nullable=True, server_default=None), - Column('model_id', Integer, ForeignKey('device_models.id', ondelete="CASCADE"), nullable=False), - Column('owner_id', Integer, ForeignKey('patients.user_id', ondelete="CASCADE"), nullable=False), - ) - - # Fill table with known device models. - # Picture codes are generated using `python -c "import uuid; print(uuid.uuid4())"` - op.bulk_insert( - device_models_table, - [ - { - "name": "ScanWatch", - "picture_code": "133184d2-3b7c-4589-bc76-9736455a56b9", - }, - { - "name": "Thermo", - "picture_code": "3b0cd959-a293-488f-94d6-5f6dc0f775f3", - }, - { - "name": "BPM Core", - "picture_code": "36b60fc2-567f-4e7e-b76e-2a9006c0f0fb", - }, - ] - ) - - -def downgrade() -> None: - op.drop_table('devices') - op.drop_table('device_models') diff --git a/backend/database/migrations/versions/a7522972878d_create_records_tables.py b/backend/database/migrations/versions/a7522972878d_create_records_tables.py deleted file mode 100644 index 9fac45b..0000000 --- a/backend/database/migrations/versions/a7522972878d_create_records_tables.py +++ /dev/null @@ -1,79 +0,0 @@ -"""create records tables - -Revision ID: a7522972878d -Revises: 7e5a8cabd3a4 -Create Date: 2023-05-13 04:46:57.958926 - -""" -from alembic import op -from sqlalchemy import Column, ForeignKey, Integer, SmallInteger, DateTime, Enum, Numeric -from sqlalchemy.sql.functions import now - -from backend.models.records import AvpuScore, RespirationScore - - -# revision identifiers, used by Alembic. -revision = 'a7522972878d' -down_revision = '7e5a8cabd3a4' -branch_labels = None -depends_on = down_revision - - -def upgrade() -> None: - op.create_table( - 'heart_rate_records', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('measured', DateTime(timezone=True), nullable=False, index=True), - Column('value', SmallInteger, nullable=False), - Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True), - ) - - op.create_table( - 'avpu_score_records', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('measured', DateTime(timezone=True), nullable=False, index=True), - Column('value', Enum(AvpuScore), nullable=False), - Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True), - ) - - op.create_table( - 'body_temperature_records', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('measured', DateTime(timezone=True), nullable=False, index=True), - Column('value', Numeric(precision=4, scale=2, decimal_return_scale=2), nullable=False), - Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True), - ) - - op.create_table( - 'blood_pressure_records', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('measured', DateTime(timezone=True), nullable=False, index=True), - Column('value_systolic', SmallInteger, nullable=False), - Column('value_diastolic', SmallInteger, nullable=False), - Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True), - ) - - op.create_table( - 'blood_oxygen_records', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('measured', DateTime(timezone=True), nullable=False, index=True), - Column('value', Numeric(precision=5, scale=2, decimal_return_scale=2), nullable=False), - Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True), - ) - - op.create_table( - 'respiration_score_records', - Column('id', Integer, primary_key=True, autoincrement=True, index=True), - Column('measured', DateTime(timezone=True), nullable=False, index=True), - Column('value', Enum(RespirationScore), nullable=False), - Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True), - ) - - -def downgrade() -> None: - op.drop_table('heart_rate_records') - op.drop_table('avpu_score_records') - op.drop_table('body_temperature_records') - op.drop_table('blood_pressure_records') - op.drop_table('blood_oxygen_records') - op.drop_table('respiration_score_records') diff --git a/backend/exceptions.py b/backend/exceptions.py deleted file mode 100644 index 8e15048..0000000 --- a/backend/exceptions.py +++ /dev/null @@ -1,13 +0,0 @@ -"""This module is a collection of project-wide exceptions.""" - - -class NotFoundException(Exception): - """Raised when a resource was unexpectedly not found.""" - - pass - - -class DataIntegrityException(Exception): - """Raised when a resource was unexpectedly not found.""" - - pass diff --git a/backend/main.py b/backend/main.py deleted file mode 100644 index 4deeca6..0000000 --- a/backend/main.py +++ /dev/null @@ -1,43 +0,0 @@ -"""Main entry point for the MEDWingS backend. - -This module defines the API routes provided by the backend. -""" - -from fastapi import FastAPI - -from backend import config -from backend.routes.devices import router as devices_router -from backend.routes.devices import tag_metadata as devices_tags -from backend.routes.users import router as users_router -from backend.routes.users import tag_metadata as users_tags -from backend.routes.records import router as records_router -from backend.routes.records import tag_metadata as records_tags - - -s = config.get_settings() -app = FastAPI( - title=f"{s.app_name} backend API", - description=f"This is the backend server API for {s.app_name}, a remote patient monitoring and early warning system.", - version=f"{s.app_version}", - contact={ - "name": f"{s.contact_name}", - "email": f"{s.contact_email}", - "url": f"{s.contact_url}", - }, - openapi_tags=[ - users_tags, - devices_tags, - records_tags, - ], -) - -app.include_router(devices_router) -app.include_router(users_router) -app.include_router(records_router) - - -@app.get("/hello/") -def hello(): - """Placeholder for a proper healthcheck endpoint.""" - - return "Hello World!" diff --git a/backend/models/devices.py b/backend/models/devices.py deleted file mode 100644 index 53f5756..0000000 --- a/backend/models/devices.py +++ /dev/null @@ -1,44 +0,0 @@ -"""This module defines the SQL data model for devices.""" - -import enum - -from sqlalchemy import Column, ForeignKey, Integer, String, DateTime, Uuid -from sqlalchemy.sql.functions import now -from sqlalchemy.orm import relationship - -from backend.database.engine import Base -from backend.models import records - - -class DeviceModel(Base): - """Model for the device_model table.""" - - __tablename__ = "device_models" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - name = Column('name', String, unique=True, nullable=False) - picture_code = Column('picture_code', String, unique=True, nullable=False) - - instances = relationship("Device", back_populates="model", uselist=True, cascade="all, delete") - - -class Device(Base): - """Model for the devices table.""" - - __tablename__ = "devices" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - added = Column('added', DateTime(timezone=True), nullable=False, server_default=now()) - last_seen = Column('last_seen', DateTime(timezone=True), nullable=True, server_default=None) - model_id = Column('model_id', Integer, ForeignKey('device_models.id', ondelete="CASCADE"), nullable=False) - owner_id = Column('owner_id', Integer, ForeignKey('patients.user_id', ondelete="CASCADE"), nullable=False) - - model = relationship(DeviceModel, back_populates="instances", uselist=False) - owner = relationship("Patient", back_populates="devices", uselist=False) - - heart_rate_records = relationship(records.HeartRateRecord, back_populates="device", uselist=True, cascade="all, delete") - avpu_score_records = relationship(records.AvpuScoreRecord, back_populates="device", uselist=True, cascade="all, delete") - blood_pressure_records = relationship(records.BloodPressureRecord, back_populates="device", uselist=True, cascade="all, delete") - blood_oxygen_records = relationship(records.BloodOxygenRecord, back_populates="device", uselist=True, cascade="all, delete") - body_temperature_records = relationship(records.BodyTemperatureRecord, back_populates="device", uselist=True, cascade="all, delete") - respiration_score_records = relationship(records.RespirationScoreRecord, back_populates="device", uselist=True, cascade="all, delete") diff --git a/backend/models/records.py b/backend/models/records.py deleted file mode 100644 index 521dde6..0000000 --- a/backend/models/records.py +++ /dev/null @@ -1,109 +0,0 @@ -"""This module defines the SQL data model for vital parameter records.""" - -import enum - -from sqlalchemy import Column, ForeignKey, DateTime, SmallInteger, Integer, Enum, Numeric -from sqlalchemy.orm import relationship - -from backend.database.engine import Base - - -class HeartRateRecord(Base): - """Model for the heart rate records table. Measured in beats per minute (bpm).""" - - __tablename__ = "heart_rate_records" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - measured = Column('measured', DateTime(timezone=True), nullable=False, index=True) - value = Column('value', SmallInteger, nullable=False) - device_id = Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True) - - device = relationship("Device", back_populates="heart_rate_records", uselist=False) - - -class AvpuScore(enum.Enum): - alert = 'a' - voice = 'v' - pain = 'p' - unresponsive = 'u' - - -class AvpuScoreRecord(Base): - """Model for the avpu score records table. Measured as a discrete classification.""" - - __tablename__ = "avpu_score_records" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - measured = Column('measured', DateTime(timezone=True), nullable=False, index=True) - value = Column('value', Enum(AvpuScore), nullable=False) - device_id = Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True) - - device = relationship("Device", back_populates="avpu_score_records", uselist=False) - - -class BodyTemperatureRecord(Base): - """Model for the body temperature records table. Measured in degrees Celsius. - - Two digits before and two digits after the decimal point: [-99.99, 99.99]. - """ - - __tablename__ = "body_temperature_records" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - measured = Column('measured', DateTime(timezone=True), nullable=False, index=True) - value = Column('value', Numeric(precision=4, scale=2, decimal_return_scale=2), nullable=False) - device_id = Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True) - - device = relationship("Device", back_populates="body_temperature_records", uselist=False) - - -class BloodPressureRecord(Base): - """Model for the blood pressure records table. Measured in (mmHg).""" - - __tablename__ = "blood_pressure_records" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - measured = Column('measured', DateTime(timezone=True), nullable=False, index=True) - value_systolic = Column('value_systolic', SmallInteger, nullable=False) - value_diastolic = Column('value_diastolic', SmallInteger, nullable=False) - device_id = Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True) - - device = relationship("Device", back_populates="blood_pressure_records", uselist=False) - - -class BloodOxygenRecord(Base): - """Model for the blood oxygen records table. Measured as a decimal percentage. - - Three digits before and two digits after the decimal point: [-999.99, 999.99]. - """ - - __tablename__ = "blood_oxygen_records" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - measured = Column('measured', DateTime(timezone=True), nullable=False, index=True) - value = Column('value', Numeric(precision=5, scale=2, decimal_return_scale=2), nullable=False) - device_id = Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True) - - device = relationship("Device", back_populates="blood_oxygen_records", uselist=False) - - -class RespirationScore(enum.Enum): - """Measures whether patient is experiencing shortness of breath, and its severity.""" - - none = 0 - low = 1 - medium = 2 - high = 3 - - -class RespirationScoreRecord(Base): - """Model for the respiration score records table. Measured as a discrete classification.""" - - __tablename__ = "respiration_score_records" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - measured = Column('measured', DateTime(timezone=True), nullable=False, index=True) - value = Column('value', Enum(RespirationScore), nullable=False) - device_id = Column('device_id', Integer, ForeignKey('devices.id', ondelete="CASCADE"), nullable=False, index=True) - - device = relationship("Device", back_populates="respiration_score_records", uselist=False) diff --git a/backend/models/users.py b/backend/models/users.py deleted file mode 100644 index a3f3f19..0000000 --- a/backend/models/users.py +++ /dev/null @@ -1,59 +0,0 @@ -"""This module defines the SQL data model for users. - -All users are either Patients or Administrators. -""" - -import enum - -from sqlalchemy import Column, ForeignKey, Integer, String, DateTime, Date, Enum, CheckConstraint -from sqlalchemy.sql.functions import now -from sqlalchemy.orm import relationship - -from backend.database.engine import Base -from backend.models.devices import Device - - -class User(Base): - """Model for the users table. Contains user info common to all user classes.""" - - __tablename__ = "users" - - id = Column('id', Integer, primary_key=True, autoincrement=True, index=True) - email = Column('email', String, unique=True, nullable=False) - password = Column('password', String, nullable=False) - created = Column('created', DateTime(timezone=True), nullable=False, server_default=now()) - updated = Column('updated', DateTime(timezone=True), nullable=False, server_default=now(), onupdate=now()) - first_name = Column('first_name', String, nullable=False) - last_name = Column('last_name', String, nullable=False) - - administrator = relationship("Administrator", back_populates="user", uselist=False, cascade="all, delete") - patient = relationship("Patient", back_populates="user", uselist=False, cascade="all, delete") - - -class Administrator(Base): - """Model for the administrators table. Contains user info specific to administrators.""" - - __tablename__ = "administrators" - - user_id = Column('user_id', Integer, ForeignKey('users.id', ondelete="CASCADE"), primary_key=True) - user = relationship(User, back_populates="administrator", uselist=False, cascade="all, delete") - - -class Gender(enum.Enum): - """Gender (as assigned at birth) of a patient.""" - - male = 'm' - female = 'f' - - -class Patient(Base): - """Model for the patients table. Contains user info specific to patients.""" - - __tablename__ = "patients" - - user_id = Column('user_id', Integer, ForeignKey('users.id', ondelete="CASCADE"), primary_key=True) - date_of_birth = Column('date_of_birth', Date, nullable=False) - gender = Column('gender', Enum(Gender), nullable=False) - - user = relationship(User, back_populates="patient", uselist=False, cascade="all, delete") - devices = relationship(Device, back_populates="owner", uselist=True, cascade="all, delete") diff --git a/backend/routes/devices.py b/backend/routes/devices.py deleted file mode 100644 index c1bb7be..0000000 --- a/backend/routes/devices.py +++ /dev/null @@ -1,52 +0,0 @@ -"""This module contains endpoints for operations related to devices.""" - -from fastapi import APIRouter, Depends, HTTPException -from sqlalchemy.orm import Session - -from backend.database.engine import get_db -from backend.schemas import devices as deviceschema -from backend.crud import devices as devicecrud -from backend.exceptions import NotFoundException - - -router = APIRouter( - prefix="/devices", - tags=["devices"] -) - -tag_metadata = { - "name": "devices", - "description": "Operations related to devices." -} - - -@router.post("/", response_model=deviceschema.Device) -def create_device(device: deviceschema.DeviceCreate, db: Session = Depends(get_db)): - try: - return devicecrud.create_device(db, device) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{id}", response_model=deviceschema.Device) -def read_device(id: int, db: Session = Depends(get_db)): - try: - return devicecrud.read_device(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.patch("/{id}", response_model=deviceschema.Device) -def update_device(id: int, device: deviceschema.DeviceUpdate, db: Session = Depends(get_db)): - try: - return devicecrud.update_device(db, device, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{id}", response_model=deviceschema.Device) -def delete_device(id: int, db: Session = Depends(get_db)): - try: - return devicecrud.delete_device(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) diff --git a/backend/routes/records.py b/backend/routes/records.py deleted file mode 100644 index 389c640..0000000 --- a/backend/routes/records.py +++ /dev/null @@ -1,191 +0,0 @@ -"""This module contains endpoints for operations related to vitals records.""" - -from datetime import datetime -from datetime import datetime - -from fastapi import APIRouter, Depends, HTTPException -from sqlalchemy.orm import Session - -from backend.database.engine import get_db -from backend.schemas import records as recordschema -from backend.crud import records as recordcrud -from backend.exceptions import NotFoundException - - -router = APIRouter( - prefix="/devices", - tags=["records"] -) - -tag_metadata = { - "name": "records", - "description": "Operations related to vitals records." -} - - -@router.post("/{device_id}/heart-rate/", response_model=recordschema.HeartRateRecord) -def create_heart_rate_record(record: recordschema.HeartRateRecordCreate, device_id: int, db: Session = Depends(get_db)): - try: - return recordcrud.create_heart_rate_record(db, record, device_id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{device_id}/heart-rate/", response_model=list[recordschema.HeartRateRecord]) -def read_heart_rate_records( - device_id: int, db: Session = Depends(get_db), - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ): - try: - return recordcrud.read_heart_rate_records_by_device(db, device_id, since, until, skip, limit) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{device_id}/heart-rate/{record_id}", response_model=recordschema.HeartRateRecord) -def delete_heart_rate_record(id: int, db: Session = Depends(get_db)): - try: - return recordcrud.delete_heart_rate_record(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.post("/{device_id}/avpu-score/", response_model=recordschema.AvpuScoreRecord) -def create_avpu_score_record(record: recordschema.AvpuScoreRecordCreate, device_id: int, db: Session = Depends(get_db)): - try: - return recordcrud.create_avpu_score_record(db, record, device_id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{device_id}/avpu-score/", response_model=list[recordschema.AvpuScoreRecord]) -def read_avpu_score_records( - device_id: int, db: Session = Depends(get_db), - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ): - try: - return recordcrud.read_avpu_score_records_by_device(db, device_id, since, until, skip, limit) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{device_id}/avpu-score/{record_id}", response_model=recordschema.AvpuScoreRecord) -def delete_avpu_score_record(id: int, db: Session = Depends(get_db)): - try: - return recordcrud.delete_avpu_score_record(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.post("/{device_id}/body-temperature/", response_model=recordschema.BodyTemperatureRecord) -def create_body_temperature_record(record: recordschema.BodyTemperatureRecordCreate, device_id: int, db: Session = Depends(get_db)): - try: - return recordcrud.create_body_temperature_record(db, record, device_id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{device_id}/body-temperature/", response_model=list[recordschema.BodyTemperatureRecord]) -def read_body_temperature_records( - device_id: int, db: Session = Depends(get_db), - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ): - try: - return recordcrud.read_body_temperature_records_by_device(db, device_id, since, until, skip, limit) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{device_id}/body-temperature/{record_id}", response_model=recordschema.BodyTemperatureRecord) -def delete_body_temperature_record(id: int, db: Session = Depends(get_db)): - try: - return recordcrud.delete_body_temperature_record(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.post("/{device_id}/blood-pressure/", response_model=recordschema.BloodPressureRecord) -def create_blood_pressure_record(record: recordschema.BloodPressureRecordCreate, device_id: int, db: Session = Depends(get_db)): - try: - return recordcrud.create_blood_pressure_record(db, record, device_id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{device_id}/blood-pressure/", response_model=list[recordschema.BloodPressureRecord]) -def read_blood_pressure_records( - device_id: int, db: Session = Depends(get_db), - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ): - try: - return recordcrud.read_blood_pressure_records_by_device(db, device_id, since, until, skip, limit) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{device_id}/blood-pressure/{record_id}", response_model=recordschema.BloodPressureRecord) -def delete_blood_pressure_record(id: int, db: Session = Depends(get_db)): - try: - return recordcrud.delete_blood_pressure_record(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.post("/{device_id}/blood-oxygen/", response_model=recordschema.BloodOxygenRecord) -def create_blood_oxygen_record(record: recordschema.BloodOxygenRecordCreate, device_id: int, db: Session = Depends(get_db)): - try: - return recordcrud.create_blood_oxygen_record(db, record, device_id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{device_id}/blood-oxygen/", response_model=list[recordschema.BloodOxygenRecord]) -def read_blood_oxygen_records( - device_id: int, db: Session = Depends(get_db), - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ): - try: - return recordcrud.read_blood_oxygen_records_by_device(db, device_id, since, until, skip, limit) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{device_id}/blood-oxygen/{record_id}", response_model=recordschema.BloodOxygenRecord) -def delete_blood_oxygen_record(id: int, db: Session = Depends(get_db)): - try: - return recordcrud.delete_blood_oxygen_record(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.post("/{device_id}/respiration-score/", response_model=recordschema.RespirationScoreRecord) -def create_respiration_score_record(record: recordschema.RespirationScoreRecordCreate, device_id: int, db: Session = Depends(get_db)): - try: - return recordcrud.create_respiration_score_record(db, record, device_id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/{device_id}/respiration-score/", response_model=list[recordschema.RespirationScoreRecord]) -def read_respiration_score_records( - device_id: int, db: Session = Depends(get_db), - since: datetime | None = None, until: datetime | None = None, - skip: int = 0, limit: int = 100, - ): - try: - return recordcrud.read_respiration_score_records_by_device(db, device_id, since, until, skip, limit) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{device_id}/respiration-score/{record_id}", response_model=recordschema.RespirationScoreRecord) -def delete_respiration_score_record(id: int, db: Session = Depends(get_db)): - try: - return recordcrud.delete_respiration_score_record(db, id) - except NotFoundException as e: - raise HTTPException(404, str(e)) diff --git a/backend/routes/users.py b/backend/routes/users.py deleted file mode 100644 index 78e0cfb..0000000 --- a/backend/routes/users.py +++ /dev/null @@ -1,60 +0,0 @@ -"""This module contains endpoints for operations related to users.""" - -from fastapi import APIRouter, Depends, HTTPException -from sqlalchemy.orm import Session - -from backend.database.engine import get_db -from backend.schemas import users as userschema -from backend.crud import users as usercrud -from backend.exceptions import NotFoundException - - -router = APIRouter( - prefix="/users", - tags=["users"] -) - -tag_metadata = { - "name": "users", - "description": "Operations related to users." -} - - -@router.post("/", response_model=userschema.User) -def create_user(user: userschema.UserCreate, db: Session = Depends(get_db)): - try: - # An exception is expected, because we need to check if a user with this email is already registered - usercrud.read_user_by_email(db, email=user.email) - raise HTTPException(400, "A user with this email address is already registered.") - except NotFoundException: - return usercrud.create_user(db=db, user=user) - - -@router.get("/{id}", response_model=userschema.User) -def read_user(id: int, db: Session = Depends(get_db)): - try: - return usercrud.read_user(db=db, id=id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.get("/", response_model=list[userschema.User]) -def read_users(skip: int = 0, limit: int = 100, db: Session = Depends(get_db)): - users = usercrud.read_users(db=db, skip=skip, limit=limit) - return users - - -@router.patch("/{id}", response_model=userschema.User) -def update_user(id: int, user: userschema.UserUpdate, db: Session = Depends(get_db)): - try: - return usercrud.update_user(db=db, user=user, id=id) - except NotFoundException as e: - raise HTTPException(404, str(e)) - - -@router.delete("/{id}", response_model=userschema.User) -def delete_user(id: int, db: Session = Depends(get_db)): - try: - return usercrud.delete_user(db=db, id=id) - except NotFoundException as e: - raise HTTPException(404, str(e)) diff --git a/backend/schemas/devices.py b/backend/schemas/devices.py deleted file mode 100644 index 600de7d..0000000 --- a/backend/schemas/devices.py +++ /dev/null @@ -1,71 +0,0 @@ -"""This module declareds the pydantic schema representation for devices.""" - -from datetime import datetime -from abc import ABC - -from pydantic import BaseModel, validator - - -class DeviceModel(BaseModel): - id: int - name: str - picture_code: str - - @validator('name') - def assert_name_is_valid(cls, name): - if not len(name): - raise ValueError("Name must not be empty.") - return name - - @validator('picture_code') - def assert_picture_is_valid(cls, picture): - if not len(picture): - raise ValueError("Picture must not be empty.") - return picture - - class Config: - orm_mode = True - - -class DeviceCreate(BaseModel): - """Device schema used for Device creation.""" - - owner_id: int - model_id: int - - @validator('model_id') - def assert_model_id_is_valid(cls, model_id): - if not 1 <= model_id <= 3: - raise ValueError("Model id is invalid.") - return model_id - - -class DeviceUpdate(BaseModel): - """Device schema used for Device updates.""" - - last_seen: datetime - - -class Device(BaseModel): - """Device schema used for Device display.""" - - id: int - model: DeviceModel - added: datetime - last_seen: datetime | None - - @validator('added') - def assert_added_is_valid(cls, added): - if added >= datetime.now(added.tzinfo): - raise ValueError("Date added cannot be in the future.") - return added - - @validator('last_seen') - def assert_last_seen_is_valid(cls, last_seen): - if last_seen: - if last_seen >= datetime.now(last_seen.tzinfo): - raise ValueError("Date last seen cannot be in the future.") - return last_seen - - class Config: - orm_mode = True diff --git a/backend/schemas/records.py b/backend/schemas/records.py deleted file mode 100644 index 7b92be3..0000000 --- a/backend/schemas/records.py +++ /dev/null @@ -1,142 +0,0 @@ -"""This module declareds the pydantic schema representation for devices.""" - -from datetime import datetime -from abc import ABC -from decimal import Decimal - -from pydantic import BaseModel, validator - -from backend.models.records import AvpuScore, RespirationScore - - -class AbstractRecordCreate(BaseModel, ABC): - """Base class containing fields common to all vitals records during creation.""" - - measured: datetime - - @validator('measured') - def assert_measured_is_valid(cls, measured: datetime) -> datetime: - if measured >= datetime.now(tz=measured.tzinfo): - raise ValueError("Time of measurement cannot be in the future.") - return measured - -class AbstractRecord(BaseModel, ABC): - """Base class containing fields common to all vitals records for display.""" - - id: int - measured: datetime - device_id: int - - @validator('measured') - def assert_measured_is_valid(cls, measured: datetime) -> datetime: - if measured >= datetime.now(tz=measured.tzinfo): - raise ValueError("Time of measurement cannot be in the future.") - return measured - - class Config: - orm_mode = True - - -class AbstractHeartRateRecord(BaseModel, ABC): - value: int - - @validator('value') - def assert_value_is_valid(cls, value): - if value < 0: - raise ValueError("Value cannot be negative.") - if value >= 32767: - raise ValueError("Value is too large.") - return value - -class HeartRateRecordCreate(AbstractRecordCreate, AbstractHeartRateRecord): - pass - -class HeartRateRecord(AbstractRecord, AbstractHeartRateRecord): - pass - - -class AbstractAvpuScoreRecord(BaseModel, ABC): - value: AvpuScore - -class AvpuScoreRecordCreate(AbstractRecordCreate, AbstractAvpuScoreRecord): - pass - -class AvpuScoreRecord(AbstractRecord, AbstractAvpuScoreRecord): - pass - - -class AbstractBodyTemperatureRecord(BaseModel, ABC): - value: Decimal - - @validator('value') - def assert_value_is_valid(cls, value: Decimal) -> Decimal: - if value < 0: - raise ValueError("Value cannot be negative.") - if value >= 100: - raise ValueError("Value cannot exceed '99.99'.") - if len(value.as_tuple().digits) > 4: - raise ValueError("Value can have at most two digits after the decimal point.") - return value - -class BodyTemperatureRecordCreate(AbstractRecordCreate, AbstractBodyTemperatureRecord): - pass - -class BodyTemperatureRecord(AbstractRecord, AbstractBodyTemperatureRecord): - pass - - -class AbstractBloodPressureRecord(BaseModel, ABC): - value_systolic: int - value_diastolic: int - - @validator('value_systolic') - def assert_value_systolic_is_valid(cls, value_systolic): - if value_systolic < 0: - raise ValueError("Value (systolic) cannot be negative.") - if value_systolic >= 32767: - raise ValueError("Value (systolic) is too large.") - return value_systolic - - @validator('value_diastolic') - def assert_value_diastolic_is_valid(cls, value_diastolic): - if value_diastolic < 0: - raise ValueError("Value (diastolic) cannot be negative.") - if value_diastolic >= 32767: - raise ValueError("Value (diastolic) is too large.") - return value_diastolic - -class BloodPressureRecordCreate(AbstractRecordCreate, AbstractBloodPressureRecord): - pass - -class BloodPressureRecord(AbstractRecord, AbstractBloodPressureRecord): - pass - - -class AbstractBloodOxygenRecord(BaseModel, ABC): - value: Decimal - - @validator('value') - def assert_value_is_valid(cls, value: Decimal) -> Decimal: - if value < 0: - raise ValueError("Value cannot be negative.") - if value > 100: - raise ValueError("Value cannot exceed '100.00'.") - if len(value.as_tuple().digits) > 5: - raise ValueError("Value can have at most two digits after the decimal point.") - return value - -class BloodOxygenRecordCreate(AbstractRecordCreate, AbstractBloodOxygenRecord): - pass - -class BloodOxygenRecord(AbstractRecord, AbstractBloodOxygenRecord): - pass - - -class AbstractRespirationScoreScoreRecord(BaseModel, ABC): - value: RespirationScore - -class RespirationScoreRecordCreate(AbstractRecordCreate, AbstractRespirationScoreScoreRecord): - pass - -class RespirationScoreRecord(AbstractRecord, AbstractRespirationScoreScoreRecord): - pass diff --git a/backend/schemas/users.py b/backend/schemas/users.py deleted file mode 100644 index d557ec4..0000000 --- a/backend/schemas/users.py +++ /dev/null @@ -1,148 +0,0 @@ -"""This module declareds the pydantic schema representation for users. - -Note that it is not a direct representation of how users are modeled in the -database. Instead, the User schema class contains all attributes from all user classes -as optional attributes. - -I haven't figured out a smart way to do this with pydantic yet, so behold the -inheritance hellhole below. -""" - -from datetime import datetime, date -from abc import ABC -from typing import Optional - -from pydantic import BaseModel, validator - -from backend.models.users import Gender -from backend.schemas.devices import Device - - -class AbstractUserInfoValidation(BaseModel, ABC): - """Base class providing common field validators.""" - - @validator('email', check_fields=False) - def assert_email_is_valid(cls, email): - if email is not None: - if not len(email): - raise ValueError("Email must not be empty.") - # TODO implement more robust check - return email - - @validator('first_name', check_fields=False) - def assert_first_name_is_valid(cls, first_name): - if first_name is not None: - if not len(first_name): - raise ValueError("First Name must not be empty.") - return first_name - - @validator('last_name', check_fields=False) - def assert_last_name_is_valid(cls, last_name): - if last_name is not None: - if not len(last_name): - raise ValueError("Last Name must not be empty.") - return last_name - - @validator('date_of_birth', check_fields=False) - def assert_dob_is_valid(cls, dob): - if dob is not None: - if dob >= date.today(): - raise ValueError("Date of birth cannot be in the future.") - return dob - - -class AbstractUser(AbstractUserInfoValidation, ABC): - """Base class for attributes common to user creation and user representation. - - A user must be either a patient or an administrator. If a user is a patient, - they must specify valid 'date_of_birth' and 'gender' attributes. - """ - - email: str - first_name: str - last_name: str - - gender: Optional[Gender] - date_of_birth: Optional[date] - is_patient: Optional[bool] - - is_admin: Optional[bool] - - @validator('is_admin') - def assert_tegridy(cls, is_admin, values): - """Ensures logical model integrity when optional fields are set.""" - - if values['is_patient']: - if is_admin: - raise ValueError('User cannot be both patient and admin.') - for key in ['gender', 'date_of_birth']: - if key not in values or values[key] is None: - raise ValueError(f"Must specify key '{key}' for patients.") - if not values['is_patient'] and not is_admin: - raise ValueError(f'User must either be patient or admin.') - return is_admin - - -class UserCreate(AbstractUser): - """Scheme for user creation.""" - - password: str - password_confirmation: str - - @validator('password_confirmation') - def assert_passwords_match(cls, password_confirmation, values): - if not password_confirmation == values['password']: - raise ValueError("Passwords do not match.") - if len(password_confirmation) < 1: - # TODO use more robust password rules - raise ValueError("Password must not be empty.") - return password_confirmation - - -class UserUpdate(AbstractUserInfoValidation): - """Scheme for user updates. - - All fields here are optional, but passwords must match if at least one was - provided. - Note that even administrator updates can specify 'gender' and 'date_of_birth' - fields, the function inserting the update into the db should handle this (and - just ignore the fields). - Switching user types is prohibited. - """ - - email: Optional[str] - first_name: Optional[str] - last_name: Optional[str] - - gender: Optional[Gender] - date_of_birth: Optional[date] - - password: Optional[str] = None - password_confirmation: Optional[str] = None - - @validator('password_confirmation') - def assert_passwords_match_or_are_both_none(cls, password_confirmation, values): - password = values.get('password') - if None not in [password, password_confirmation]: - if not password == password_confirmation: - raise ValueError("Passwords do not match.") - if len(password_confirmation) < 1: - # TODO use more robust password rules - raise ValueError("Password must not be empty.") - return password_confirmation - - -class User(AbstractUser): - """Final representation of all types of users, wrapped into one User schema. - - The id, created and updated fields are filled by the db during creation, so - they are not needed in the parent classes. - """ - - id: int - created: datetime - updated: datetime - devices: list[Device] = [] - - class Config: - orm_mode = True diff --git a/development.Caddyfile b/development.Caddyfile deleted file mode 100644 index 7baee06..0000000 --- a/development.Caddyfile +++ /dev/null @@ -1,38 +0,0 @@ -:3000 { - - encode zstd gzip - - @staticfiles { - method GET - path /static/* - } - handle @staticfiles { - file_server { - root /app/public/ - } - } - - handle_path /api/* { - reverse_proxy * backend:3001 - } - - @robots { - method GET - path /robots.txt - path /sitemap.xml - } - handle @robots { - file_server { - root /app/robots/ - } - } - - handle * { - reverse_proxy * parcel:1234 - } - - log { - output stderr - format console - } -} diff --git a/development.backend.Dockerfile b/development.backend.Dockerfile deleted file mode 100644 index 802c5c4..0000000 --- a/development.backend.Dockerfile +++ /dev/null @@ -1,25 +0,0 @@ -# syntax=docker/dockerfile:1 - -FROM python:3 - -# Create non-root user -ARG CUSTOM_UID -ARG CUSTOM_GID -ENV CUSTOM_USERNAME=backend -ENV CUSTOM_GROUPNAME=backend -RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ - useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \ - mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app - -# Copy source files -WORKDIR /app -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} requirements.txt /app/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} backend /app/backend/ - -# Install dependencies -RUN pip install -r requirements.txt - -# Run ASGI server -EXPOSE 3001/tcp -USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} -ENTRYPOINT ["uvicorn", "backend.main:app", "--root-path", "/api", "--host", "0.0.0.0", "--port", "3001", "--access-log", "--use-colors", "--log-level", "debug", "--reload"] diff --git a/development.caddy.Dockerfile b/development.caddy.Dockerfile new file mode 100644 index 0000000..d1d307f --- /dev/null +++ b/development.caddy.Dockerfile @@ -0,0 +1,24 @@ +# syntax=docker/dockerfile:1 + +FROM alpine:latest + +# Install caddy +RUN apk add --no-cache caddy + +# Create non-root user +ARG CUSTOM_UID +ARG CUSTOM_GID +ENV CUSTOM_USERNAME=webserver +ENV CUSTOM_GROUPNAME=webserver +RUN addgroup --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ + adduser --uid ${CUSTOM_UID:-1000} --shell /bin/ash ${CUSTOM_USERNAME} --ingroup ${CUSTOM_GROUPNAME} --disabled-password && \ + mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app && chmod 700 /app + +# Copy caddy config +WORKDIR /app +COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} Caddyfile /app/ + +# Run Caddy in development mode +USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} +EXPOSE 8000 +ENTRYPOINT ["caddy", "run", "--config", "/app/Caddyfile", "--adapter", "caddyfile", "--watch"] diff --git a/development.django.Dockerfile b/development.django.Dockerfile new file mode 100644 index 0000000..31ebed1 --- /dev/null +++ b/development.django.Dockerfile @@ -0,0 +1,33 @@ +# syntax=docker/dockerfile:1 + +FROM python:alpine + +# Install cron daemon and supervisord +RUN apk add --no-cache dcron supervisor + +# Create non-root user +ARG CUSTOM_UID +ARG CUSTOM_GID +ENV CUSTOM_USERNAME=django +ENV CUSTOM_GROUPNAME=django +RUN addgroup --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ + adduser --uid ${CUSTOM_UID:-1000} --shell /bin/ash ${CUSTOM_USERNAME} --ingroup ${CUSTOM_GROUPNAME} --disabled-password && \ + mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app && chmod 700 /app +ENV PATH "$PATH:/home/${CUSTOM_GROUPNAME}/.local/bin" + +# Add supervisord conf +COPY development.supervisord.conf /etc/supervisord.conf + +# Add cron job +COPY --chmod=600 django.crontab /etc/crontabs/django + +# Copy source files +WORKDIR /app +COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} app/ /app/ + +# Install dependencies +RUN pip install -r requirements.txt + +# Run supervisord +EXPOSE 8000/tcp +CMD ["/usr/bin/supervisord", "-c", "/etc/supervisord.conf"] diff --git a/development.docker-compose.yml b/development.docker-compose.yml index dfaa1b7..d3642f0 100644 --- a/development.docker-compose.yml +++ b/development.docker-compose.yml @@ -3,88 +3,96 @@ version: "3" services: - frontend: - container_name: frontend + medwings-caddy: + container_name: medwings-caddy restart: unless-stopped - depends_on: - - parcel build: context: . - dockerfile: ./development.frontend.Dockerfile + dockerfile: development.caddy.Dockerfile args: CUSTOM_UID: 1000 CUSTOM_GID: 1000 - environment: - TZ: Europe/Berlin ports: - - "8000:3000" + - "8000:8000" volumes: - - ./public/:/app/public/:ro - - ./robots/:/app/robots/:ro - - ./development.Caddyfile:/app/Caddyfile:ro - parcel: - container_name: parcel - restart: unless-stopped - build: - context: . - dockerfile: ./development.parcel.Dockerfile - args: - CUSTOM_UID: 1000 - CUSTOM_GID: 1000 - volumes: - - ./frontend/:/app/frontend/:ro - - ./postcss.config.js:/app/postcss.config.js:ro - - ./.postcssrc:/app/.postcssrc:ro - - ./tailwind.config.js:/app/tailwind.config.js:ro - expose: - - "1234" - backend: - container_name: backend + - ./Caddyfile:/app/Caddyfile + environment: + TZ: ${TIMEZONE} + medwings-django: + container_name: medwings-django restart: unless-stopped depends_on: - - frontend - - db + - medwings-caddy + - ${PG_HOST} build: context: . - dockerfile: ./development.backend.Dockerfile + dockerfile: ./development.django.Dockerfile args: CUSTOM_UID: 1000 CUSTOM_GID: 1000 expose: - - "3001" + - "8000" volumes: - - ./backend/:/app/backend/:ro - - ./requirements.txt:/app/requirements.txt:ro + - ./app/authentication/:/app/authentication:ro + - ./app/core/:/app/core:ro + - ./app/gotify/:/app/gotify:ro + - ./app/manage.py:/app/manage.py:ro + - ./app/medwings/:/app/medwings:ro + - ./app/requirements.txt:/app/requirements.txt:ro + - ./app/static/:/app/static:ro + - ./app/withings/:/app/withings:ro environment: - APP_NAME: "MEDWingS" - ADMIN_EMAIL: "admin@example.com" - DEBUG_MODE: "true" - POSTGRES_HOST: "db" - POSTGRES_PORT: "5432" - POSTGRES_DB: "medwings" - POSTGRES_USER: "medwings" - POSTGRES_PASSWORD: "medwings" - db: - image: postgres - container_name: db + TZ: ${TIMEZONE} + PG_NAME: ${PG_NAME} + PG_USER: ${PG_USER} + PG_PASSWORD: ${PG_PASSWORD} + PG_HOST: ${PG_HOST} + PG_PORT: ${PG_PORT} + WITHINGS_CLIENT_ID: ${WITHINGS_CLIENT_ID} + WITHINGS_CLIENT_SECRET: ${WITHINGS_CLIENT_SECRET} + GOTIFY_USER: ${GOTIFY_USER} + GOTIFY_PASSWORD: ${GOTIFY_PASSWORD} + GOTIFY_HOST: ${GOTIFY_HOST} + GOTIFY_PUBLIC_URL: ${GOTIFY_PUBLIC_URL} + medwings-postgres: + image: postgres:alpine + container_name: ${PG_HOST} restart: unless-stopped expose: - - "5432" + - ${PG_PORT} volumes: - ./.postgres:/var/lib/postgresql/data environment: - POSTGRES_DB: "medwings" - POSTGRES_USER: "medwings" - POSTGRES_PASSWORD: "medwings" - pgweb: + POSTGRES_DB: ${PG_NAME} + POSTGRES_USER: ${PG_USER} + POSTGRES_PASSWORD: ${PG_PASSWORD} + TZ: ${TIMEZONE} + medwings-gotify: + image: gotify/server + container_name: medwings-gotify + restart: unless-stopped + ports: + - "8001:80" + volumes: + - ./.gotify:/app/data + environment: + TZ: ${TIMEZONE} + GOTIFY_SERVER_SSL_REDIRECTTOHTTPS: false + GOTIFY_DEFAULTUSER_NAME: ${GOTIFY_USER} + GOTIFY_DEFAULTUSER_PASS: ${GOTIFY_PASSWORD} + GOTIFY_SERVER_CORS_ALLOWORIGINS: "- \"localhost:8000\"\n- \"medwings.lobbes.dev\"" + GOTIFY_SERVER_CORS_ALLOWMETHODS: "- \"GET\"\n- \"POST\"" + GOTIFY_SERVER_CORS_ALLOWHEADERS: "- \"Authorization\"\n- \"content-type\"" + medwings-pgweb: image: sosedoff/pgweb - container_name: pgweb + container_name: medwings-pgweb restart: unless-stopped depends_on: - - db + - ${PG_HOST} ports: - - "8001:8081" + - "8002:8081" environment: - DATABASE_URL: "postgres://medwings:medwings@db:5432/medwings?sslmode=disable" + PGWEB_DATABASE_URL: postgres://${PG_USER}:${PG_PASSWORD}@${PG_HOST}:${PG_PORT}/${PG_NAME}?sslmode=disable + TZ: ${TIMEZONE} ... diff --git a/development.frontend.Dockerfile b/development.frontend.Dockerfile deleted file mode 100644 index 05e2ccd..0000000 --- a/development.frontend.Dockerfile +++ /dev/null @@ -1,33 +0,0 @@ -# syntax=docker/dockerfile:1 - -FROM debian:latest - -# Install Caddy -ENV DEBIAN_FRONTEND=noninteractive -RUN apt update && apt install -y curl && \ - apt install -y debian-keyring debian-archive-keyring apt-transport-https && \ - curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/gpg.key' | gpg --dearmor -o /usr/share/keyrings/caddy-stable-archive-keyring.gpg && \ - curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/debian.deb.txt' > /etc/apt/sources.list.d/caddy-stable.list && \ - apt update && apt install -y caddy && \ - rm -rf /var/lib/apt/lists/* - -# Create non-root user -ARG CUSTOM_UID -ARG CUSTOM_GID -ENV CUSTOM_USERNAME=webserver -ENV CUSTOM_GROUPNAME=webserver -RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ - useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \ - mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app - -# Copy source files -WORKDIR /app -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} development.Caddyfile /app/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} public /app/public/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} robots /app/robots/ - -# Install dependencies -USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} - -# Run Caddy in development mode -ENTRYPOINT ["caddy", "run", "--config", "/app/development.Caddyfile", "--adapter", "caddyfile", "--watch"] diff --git a/development.parcel.Dockerfile b/development.parcel.Dockerfile deleted file mode 100644 index f5ddba1..0000000 --- a/development.parcel.Dockerfile +++ /dev/null @@ -1,34 +0,0 @@ -# syntax=docker/dockerfile:1 - -FROM debian:latest - -# Install packages -ENV DEBIAN_FRONTEND=noninteractive -RUN apt update && apt install -y curl && \ - curl -fsSL https://deb.nodesource.com/setup_19.x | bash - && apt-get install -y nodejs && \ - apt install -y debian-keyring debian-archive-keyring apt-transport-https && \ - curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/gpg.key' | gpg --dearmor -o /usr/share/keyrings/caddy-stable-archive-keyring.gpg && \ - curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/debian.deb.txt' > /etc/apt/sources.list.d/caddy-stable.list && \ - apt update && apt install -y caddy && \ - rm -rf /var/lib/apt/lists/* - -# Create non-root user -ARG CUSTOM_UID -ARG CUSTOM_GID -ENV CUSTOM_USERNAME=webserver -ENV CUSTOM_GROUPNAME=webserver -RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ - useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \ - mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app - -# Copy source files -WORKDIR /app -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} package.json package-lock.json .postcssrc postcss.config.js tailwind.config.js /app/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} frontend /app/frontend/ - -# Install dependencies -USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} -RUN npm install - -# Run the parcel file watcher -ENTRYPOINT ["npx", "parcel", "frontend/src/html/index.html"] diff --git a/development.supervisord.conf b/development.supervisord.conf new file mode 100644 index 0000000..01b0b58 --- /dev/null +++ b/development.supervisord.conf @@ -0,0 +1,17 @@ +[supervisord] +nodaemon=true +user=root + +[program:django] +command=sh -c 'python manage.py runserver 0.0.0.0:8000' +directory=/app +user=django +autostart=true +autorestart=true +redirect_stderr=true + +[program:crond] +command=crond -f +autostart=true +autorestart=true +redirect_stderr=true diff --git a/django.crontab b/django.crontab new file mode 100644 index 0000000..5d88230 --- /dev/null +++ b/django.crontab @@ -0,0 +1 @@ +0 10,13,16,19,22 * * * python /app/manage.py notify_all diff --git a/docs/figures/.$gantt.drawio.bkp b/docs/figures/.$gantt.drawio.bkp deleted file mode 100644 index 2243b3d..0000000 --- a/docs/figures/.$gantt.drawio.bkp +++ /dev/null @@ -1 +0,0 @@ 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- - - diff --git a/frontend/src/js/App.vue b/frontend/src/js/App.vue deleted file mode 100644 index a14d0c3..0000000 --- a/frontend/src/js/App.vue +++ /dev/null @@ -1,5 +0,0 @@ - diff --git a/frontend/src/js/components/ExampleComponent.vue b/frontend/src/js/components/ExampleComponent.vue deleted file mode 100644 index 5e44d6c..0000000 --- a/frontend/src/js/components/ExampleComponent.vue +++ /dev/null @@ -1,26 +0,0 @@ - - - diff --git a/frontend/src/js/components/UserList.vue b/frontend/src/js/components/UserList.vue deleted file mode 100644 index 384a8eb..0000000 --- a/frontend/src/js/components/UserList.vue +++ /dev/null @@ -1,118 +0,0 @@ - - - diff --git a/frontend/src/js/main.js b/frontend/src/js/main.js deleted file mode 100644 index 26af893..0000000 --- a/frontend/src/js/main.js +++ /dev/null @@ -1,12 +0,0 @@ -import { createApp } from 'vue'; -import App from './App.vue'; -import router from './router'; - -// Enable global Vue feature flags: -// https://stackoverflow.com/questions/70083869/parcel-2-vue-3-how-to-set-global-feature-flags-vue-devtools-disabled -globalThis.__VUE_OPTIONS_API__ = true; -globalThis.__VUE_PROD_DEVTOOLS__ = false; - -const app = createApp(App); -app.use(router); -app.mount("#app"); diff --git a/frontend/src/js/router/index.js b/frontend/src/js/router/index.js deleted file mode 100644 index 555bbdc..0000000 --- a/frontend/src/js/router/index.js +++ /dev/null @@ -1,22 +0,0 @@ -import { createRouter, createWebHistory } from 'vue-router'; -import Home from '../views/Home.vue'; - -const routes = [ - { - path: '/', - name: 'Home', - component: Home, - }, - { - path: '/:pathMatch(.*)*', - name: 'NotFound', - component: () => import('../views/NotFound.vue'), - }, -]; - -const router = createRouter({ - history: createWebHistory(process.env.BASE_URL), - routes, -}); - -export default router; diff --git a/frontend/src/js/views/Home.vue b/frontend/src/js/views/Home.vue deleted file mode 100644 index 0c0970f..0000000 --- a/frontend/src/js/views/Home.vue +++ /dev/null @@ -1,17 +0,0 @@ - - - diff --git a/frontend/src/js/views/NotFound.vue b/frontend/src/js/views/NotFound.vue deleted file mode 100644 index 07d777d..0000000 --- a/frontend/src/js/views/NotFound.vue +++ /dev/null @@ -1,15 +0,0 @@ - - - diff --git a/frontend/src/js/views/UserList.vue b/frontend/src/js/views/UserList.vue deleted file mode 100644 index 3261d99..0000000 --- a/frontend/src/js/views/UserList.vue +++ /dev/null @@ -1,17 +0,0 @@ - - - diff --git a/package-lock.json b/package-lock.json index c13f5a0..8914626 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,28 +1,18 @@ { - "name": "MEDWings", + "name": "medwings", "version": "0.0.1", - "lockfileVersion": 2, + "lockfileVersion": 3, "requires": true, "packages": { "": { - "name": "MEDWings", + "name": "medwings", "version": "0.0.1", - "license": "UNLICENSED", - "dependencies": { - "axios": "^1.2.2", - "vue": "^3.2.45", - "vue-router": "^4.1.6" - }, + "license": "AGPL-3.0", "devDependencies": { - "@parcel/packager-raw-url": "^2.8.3", - "@parcel/transformer-vue": "^2.8.2", - "@parcel/transformer-webmanifest": "^2.8.3", - "buffer": "^5.7.1", - "parcel": "^2.8.2", - "postcss": "^8.4.20", - "postcss-import": "^15.1.0", - "process": "^0.11.10", - "tailwindcss": "^3.2.4" + "autoprefixer": "^10.4.14", + "parcel": "^2.9.3", + "postcss": "^8.4.26", + "tailwindcss": "^3.3.3" } }, "node_modules/@alloc/quick-lru": { @@ -38,33 +28,33 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.21.4", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.21.4.tgz", - "integrity": "sha512-LYvhNKfwWSPpocw8GI7gpK2nq3HSDuEPC/uSYaALSJu9xjsalaaYFOq0Pwt5KmVqwEbZlDu81aLXwBOmD/Fv9g==", + "version": "7.22.5", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.22.5.tgz", + "integrity": "sha512-Xmwn266vad+6DAqEB2A6V/CcZVp62BbwVmcOJc2RPuwih1kw02TjQvWVWlcKGbBPd+8/0V5DEkOcizRGYsspYQ==", "dev": true, "dependencies": { 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"https://registry.npmjs.org/yaml/-/yaml-2.2.2.tgz", - "integrity": "sha512-CBKFWExMn46Foo4cldiChEzn7S7SRV+wqiluAb6xmueD/fGyRHIhX8m14vVGgeFWjN540nKCNVj6P21eQjgTuA==", - "dev": true - } } } diff --git a/package.json b/package.json index 214b10f..d47672b 100644 --- a/package.json +++ b/package.json @@ -1,25 +1,27 @@ { - "name": "MEDWings", + "name": "medwings", "version": "0.0.1", - "description": "An experimental mobile early warning system for clinical deterioration.", - "scripts": {}, - "private": true, + "description": "Mobile Early Deterioration Warning System.", + "main": "./app/static/dist/index.js", "author": "Julian Lobbes", - "license": "UNLICENSED", + "license": "AGPL-3.0", + "source": "./assets/js/entry.js", + "targets": { + "default": { + "distDir": "./app/static/dist/" + } + }, + "scripts": { + "build": "parcel build --dist-dir app/static/dist assets/main.js", + "start": "parcel --dist-dir app/static/dist --hmr-port 34471 assets/main.js", + "clean": "rm -rvf app/static/dist/*" + }, "devDependencies": { - "@parcel/packager-raw-url": "^2.8.3", - "@parcel/transformer-vue": "^2.8.2", - "@parcel/transformer-webmanifest": "^2.8.3", - "buffer": "^5.7.1", - "parcel": "^2.8.2", - "postcss": "^8.4.20", - "postcss-import": "^15.1.0", - "process": "^0.11.10", - "tailwindcss": "^3.2.4" + "autoprefixer": "^10.4.14", + "parcel": "^2.9.3", + "postcss": "^8.4.26", + "tailwindcss": "^3.3.3" }, "dependencies": { - "axios": "^1.2.2", - "vue": "^3.2.45", - "vue-router": "^4.1.6" } } diff --git a/postcss.config.js b/postcss.config.js deleted file mode 100644 index 8ff0fbf..0000000 --- a/postcss.config.js +++ /dev/null @@ -1,8 +0,0 @@ -module.exports = { - plugins: [ - require('postcss-import'), - require('tailwindcss/nesting'), - require('tailwindcss'), - require('autoprefixer'), - ] -}; diff --git a/production.Caddyfile b/production.Caddyfile deleted file mode 100644 index b8bab8a..0000000 --- a/production.Caddyfile +++ /dev/null @@ -1,40 +0,0 @@ -:3000 { - - encode zstd gzip - - @staticfiles { - method GET - path /static/* - } - handle @staticfiles { - file_server { - root /app/public/ - } - } - - handle_path /api/* { - reverse_proxy * backend:3001 - } - - @robots { - method GET - path /robots.txt - path /sitemap.xml - } - handle @robots { - file_server { - root /app/robots/ - } - } - - handle * { - root * /app/dist/ - file_server - try_files {path} / - } - - log { - output stderr - format console - } -} diff --git a/production.backend.Dockerfile b/production.backend.Dockerfile deleted file mode 100644 index b5a6a21..0000000 --- a/production.backend.Dockerfile +++ /dev/null @@ -1,25 +0,0 @@ -# syntax=docker/dockerfile:1 - -FROM python:3 - -# Create non-root user -ARG CUSTOM_UID -ARG CUSTOM_GID -ENV CUSTOM_USERNAME=backend -ENV CUSTOM_GROUPNAME=backend -RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ - useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \ - mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app - -# Copy source files -WORKDIR /app -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} requirements.txt /app/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} backend /app/backend/ - -# Install dependencies -RUN pip install -r requirements.txt - -# Run ASGI server -EXPOSE 3001/tcp -USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} -ENTRYPOINT ["uvicorn", "backend.main:app", "--root-path", "/api", "--host", "0.0.0.0", "--port", "3001", "--access-log"] diff --git a/production.docker-compose.yml b/production.docker-compose.yml deleted file mode 100644 index 03a1c8c..0000000 --- a/production.docker-compose.yml +++ /dev/null @@ -1,65 +0,0 @@ ---- - -version: "3" - -services: - frontend: - container_name: frontend - restart: unless-stopped - build: - context: . - dockerfile: ./production.frontend.Dockerfile - args: - CUSTOM_UID: 1000 - CUSTOM_GID: 1000 - networks: - - proxy - - medwings - environment: - TZ: Europe/Berlin - ports: - - "8000:3000" - backend: - container_name: backend - restart: unless-stopped - build: - context: . - dockerfile: ./production.backend.Dockerfile - args: - CUSTOM_UID: 1000 - CUSTOM_GID: 1000 - networks: - - medwings - expose: - - "3001" - environment: - APP_NAME: "MEDWingS" - ADMIN_EMAIL: "admin@example.com" - DEBUG_MODE: "true" - POSTGRES_HOST: "db" - POSTGRES_PORT: "5432" - POSTGRES_DB: "medwings" - POSTGRES_USER: "medwings" - POSTGRES_PASSWORD: "medwings" - db: - image: postgres - container_name: db - restart: unless-stopped - networks: - - medwings - expose: - - "5432" - volumes: - - /srv/medwings/db:/var/lib/postgresql/data - environment: - POSTGRES_DB: "medwings" - POSTGRES_USER: "medwings" - POSTGRES_PASSWORD: "medwings" - -networks: - proxy: - external: true - medwings: - external: false - -... diff --git a/production.frontend.Dockerfile b/production.frontend.Dockerfile deleted file mode 100644 index c984b66..0000000 --- a/production.frontend.Dockerfile +++ /dev/null @@ -1,36 +0,0 @@ -# syntax=docker/dockerfile:1 - -FROM debian:latest - -# Install packages -ENV DEBIAN_FRONTEND=noninteractive -RUN apt update && apt install -y curl && \ - curl -fsSL https://deb.nodesource.com/setup_19.x | bash - && apt-get install -y nodejs && \ - apt install -y debian-keyring debian-archive-keyring apt-transport-https && \ - curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/gpg.key' | gpg --dearmor -o /usr/share/keyrings/caddy-stable-archive-keyring.gpg && \ - curl -1sLf 'https://dl.cloudsmith.io/public/caddy/stable/debian.deb.txt' > /etc/apt/sources.list.d/caddy-stable.list && \ - apt update && apt install -y caddy && \ - rm -rf /var/lib/apt/lists/* - -# Create non-root user -ARG CUSTOM_UID -ARG CUSTOM_GID -ENV CUSTOM_USERNAME=webserver -ENV CUSTOM_GROUPNAME=webserver -RUN groupadd --gid ${CUSTOM_GID:-1000} ${CUSTOM_GROUPNAME} && \ - useradd --uid ${CUSTOM_UID:-1000} --gid ${CUSTOM_GID:-1000} --create-home --shell /bin/bash ${CUSTOM_USERNAME} && \ - mkdir /app && chown ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} /app - -# Copy source files -WORKDIR /app -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} package.json package-lock.json .postcssrc postcss.config.js tailwind.config.js production.Caddyfile /app/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} frontend /app/frontend/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} public /app/public/ -COPY --chown=${CUSTOM_USERNAME}:${CUSTOM_GROUPNAME} robots /app/robots/ - -# Install dependencies -USER ${CUSTOM_UID:-1000}:${CUSTOM_GID:-1000} -RUN npm install -RUN npx parcel build frontend/src/html/index.html - -ENTRYPOINT ["caddy", "run", "--config", "/app/production.Caddyfile", "--adapter", "caddyfile"] diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 25e846a..0000000 --- a/requirements.txt +++ /dev/null @@ -1,16 +0,0 @@ -alembic==1.10.4 -anyio==3.6.2 -click==8.1.3 -fastapi==0.95.1 -greenlet==2.0.2 -h11==0.14.0 -idna==3.4 -Mako==1.2.4 -MarkupSafe==2.1.2 -psycopg2-binary==2.9.6 -pydantic==1.10.7 -sniffio==1.3.0 -SQLAlchemy==2.0.13 -starlette==0.26.1 -typing_extensions==4.5.0 -uvicorn==0.22.0 diff --git a/robots/robots.txt b/robots/robots.txt deleted file mode 100644 index 24d33c1..0000000 --- a/robots/robots.txt +++ /dev/null @@ -1,4 +0,0 @@ -User-agent: * -Allow: / - -Sitemap: https://medwings.lobbes.dev/sitemap.xml diff --git a/robots/sitemap.xml b/robots/sitemap.xml deleted file mode 100644 index afe1724..0000000 --- a/robots/sitemap.xml +++ /dev/null @@ -1,7 +0,0 @@ - - - - https://medwings.lobbes.dev/index.html - 2023-05-10 - - diff --git a/tailwind.config.js b/tailwind.config.js index e9f68b5..1e320dd 100644 --- a/tailwind.config.js +++ b/tailwind.config.js @@ -1,28 +1,129 @@ -module.exports = { - content: [ - "./frontend/src/**/*.html", - "./frontend/src/**/*.js", - "./frontend/src/**/*.vue", - ], +/** @type {import('tailwindcss').Config} */ +export default { + content: ['./app/*/templates/**/*.html'], theme: { extend: { fontFamily: { - sans: ["Montserrat", "NotoColorEmoji"], - serif: ["Lora", "NotoColorEmoji"], - mono: ["SourceCodePro", "NotoColorEmoji"], - accent: ["Kanit", "NotoColorEmoji"], - emoji: ["NotoColorEmoji"], + sans: ["Montserrat"], + serif: ["Lora"], + mono: ["SourceCodePro"], + accent: ["Kanit"], + title: ["PlayfairDisplaySC"] }, colors: { - transparent: 'transparent', - current: 'currentColor', - lightshade: '#eeebed', - lightaccent: '#8C919C', - main: '#1C4F97', - darkaccent: '#B3425C', - darkshade: '#221F2F', + transparent: "transparent", + current: "currentColor", + primary: { + 50: "#050511", + 100: "#0F0E35", + 200: "#19165A", + 300: "#23207F", + 400: "#2D2AA3", + 500: "#323a8a", + DEFAULT: "#323a8a", + 600: "#575DA2", + 700: "#7D81BA", + 800: "#A2A4D2", + 900: "#C8C8EB", + }, + secondary: { + 50: "#0A1515", + 100: "#123839", + 200: "#1A5C5E", + 300: "#228083", + 400: "#2AA5A8", + 500: "#4bb1bd", + DEFAULT: "#4bb1bd", + 600: "#71C3C6", + 700: "#97D4D0", + 800: "#BCE6DA", + 900: "#E2F7E5", + }, + accent: { + 50: "#33000b", + 100: "#660015", + 200: "#99001f", + 300: "#cc0029", + 400: "#e04159", + 500: "#e85a6a", + DEFAULT: "#e85a6a", + 600: "#f0747b", + 700: "#f88d8d", + 800: "#fda6a6", + 900: "#ffbfbe", + }, + background: { + 50: "#0D0C0B", + 100: "#28251F", + 200: "#444133", + 300: "#605D48", + 400: "#7C785D", + 500: "#fcfbf8", + DEFAULT: "#fcfbf8", + 600: "#FDFDF6", + 700: "#FDFEFA", + 800: "#FEFFFD", + 900: "#FFFFFF", + }, + text: { + 50: "#0A0A0A", + 100: "#141414", + 200: "#1F1F1F", + 300: "#292929", + 400: "#343434", + 500: "#202120", + DEFAULT: "#202120", + 600: "#5B5B5B", + 700: "#767676", + 800: "#919191", + 900: "#ADADAD", + }, + success: { + 50: "#001400", + 100: "#002800", + 200: "#003D00", + 300: "#005100", + 400: "#006600", + 500: "#00CC00", + DEFAULT: "#00CC00", + 600: "#33D133", + 700: "#66D766", + 800: "#99DD99", + 900: "#CCE3CC", + }, + warning: { + 50: "#191200", + 100: "#332400", + 200: "#4D3600", + 300: "#664800", + 400: "#805A00", + 500: "#EDC000", + DEFAULT: "#EDC000", + 600: "#EFD133", + 700: "#F1E266", + 800: "#F4F399", + 900: "#F7F4CC", + }, + failure: { + 50: "#190000", + 100: "#320000", + 200: "#4C0000", + 300: "#660000", + 400: "#800000", + 500: "#E40000", + DEFAULT: "#E40000", + 600: "#E43333", + 700: "#E46666", + 800: "#E69999", + 900: "#E9CCCC", + }, }, + screens: { + '3xl': '1920px', + '4xl': '3840px', + } }, }, plugins: [], -}; +} +